View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6745_low_37 (Length: 266)
Name: NF6745_low_37
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 5957902 - 5957666
Alignment:
| Q |
19 |
cttattcatccccaaaacaatctcctccccaaactcatcctccccaactttccccaacaaagccgcccgtccgccaagcctgacatgggccaccgccaca |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5957902 |
cttattcatccccaaaacaatctcctccccaaactcatcctccccaactttccccaacaaagccgcccgtccgccaagcctgacatgggccaccgccaca |
5957803 |
T |
|
| Q |
119 |
ttcgacggtggcccaccaggtgctcgcgcaaactccggcggcttccattgtaacatcttccattcggtgtatatatctgggtccattggaaactcgtgca |
218 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
|
|
| T |
5957802 |
ttcgacggcggcccaccaggtgctcgcgcaaactccggcggcttccattgtaacatcttccattctgtgtatatatctgggtccattggaaactcctgca |
5957703 |
T |
|
| Q |
219 |
cacgcaccgtaggtagaaactccctctatgctactcc |
255 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
5957702 |
cacgcaccgtaggtagaaactccctctgtgctgctcc |
5957666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University