View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_38 (Length: 266)
Name: NF6745_low_38
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 2 - 258
Target Start/End: Complemental strand, 9299644 - 9299388
Alignment:
| Q |
2 |
aatgaaatgacatgagcaaagttgtgtcacctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtc |
101 |
Q |
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| T |
9299644 |
aatgaaatgacatgagcaaagttgtgtcacctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtc |
9299545 |
T |
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| Q |
102 |
aaaatttgttccataccatttcaatgagagtatgtttgattgaatggaagatgcgtgnnnnnnngaaacgcgatcaaacagtttgatgcagtatacaaga |
201 |
Q |
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| T |
9299544 |
aaaatttgttccataccatttcaatgagagtatgtttgattgaatggaagatgcgggaaataaagcaacgcgatcaaacagtttgatgcagtatacaaga |
9299445 |
T |
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| Q |
202 |
tcagattcaatgattctttcgctatccgaatcagcaacataaattggacatgatgtc |
258 |
Q |
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| T |
9299444 |
tcagattcaatgatactatcgctatccgaataagcaacataaattggacatgatgtc |
9299388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 32 - 211
Target Start/End: Original strand, 9258096 - 9258275
Alignment:
| Q |
32 |
ctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagag |
131 |
Q |
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| T |
9258096 |
ctgcagaggataaaataacgaatgtaatcttcttcttcgatttatgttcacatttcaagcatcctatgtcaaaatttgttcccgaccatgtcaacgagag |
9258195 |
T |
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| Q |
132 |
tatgtttgattgaatggaagatgcgtgnnnnnnngaaacgcgatcaaacagtttgatgcagtatacaagatcagattcaa |
211 |
Q |
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| T |
9258196 |
acggttgtattgaatagtagatgcatcaaatgaggaaacgtgatcaaacaatttgatgcagtatactaagtcagattcaa |
9258275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 76 - 131
Target Start/End: Original strand, 9467363 - 9467418
Alignment:
| Q |
76 |
tgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagag |
131 |
Q |
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|||| ||||||||||||||||| ||||||||||||||| ||||| ||||| |||| |
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| T |
9467363 |
tgtttacatttcaagcatcctatgtcaaaatttgttcctgaccatgtcaataagag |
9467418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 120
Target Start/End: Complemental strand, 9171020 - 9170928
Alignment:
| Q |
28 |
tcacctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccat |
120 |
Q |
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|||||||| |||| |||| |||||| || ||||| ||| ||| ||||| |||||||||||||||| || |||||||||||||||| ||||| |
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| T |
9171020 |
tcacctgctgaggttaaagtaatgagtgttatcctcttctttgttttgttctcacatttcaagcatcttatgtcaaaatttgttccagaccat |
9170928 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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