View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_39 (Length: 265)
Name: NF6745_low_39
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_39 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 37335288 - 37335038
Alignment:
| Q |
1 |
tatcaatattaaaacactcttttgtggtcaatttcatgtgcagtgcttttaaaaataattccgaagaagccgaatattttatttttggcatttaaatcat |
100 |
Q |
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| T |
37335288 |
tatcaatattaaaacactcttttgtggtcaatttcatgtgcagtgcttttaaaaataattccgaagaagccgaatattttatttttggcatttaaataat |
37335189 |
T |
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| Q |
101 |
tcaaacaagaacattggtcaactgaaaattctcaaaacaaaatagataagagtacaaaaccaagaagcgtgacactaaagtatacattggggccaaaact |
200 |
Q |
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| T |
37335188 |
tcaaacaagaacattggtcaactgaaaattctcaaaacaaaatagataagagtacaaaaccaagaagcgtgacactaaaatatacattggggccaaaact |
37335089 |
T |
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| Q |
201 |
gttcattgaaactattcattaaggacactctttaaagatactcgattaaga |
251 |
Q |
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| T |
37335088 |
gttcattgaaactattcattaaggacactctttaaagatactcgattaaga |
37335038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 11664516 - 11664455
Alignment:
| Q |
73 |
aatattttatttttggcatttaaatcattcaaacaagaacattggtcaactgaaaattctca |
134 |
Q |
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| T |
11664516 |
aatattttatctttggcattcaaatcattcaaacaagaatattagcaaaccgaaaattctca |
11664455 |
T |
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