View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_4 (Length: 671)
Name: NF6745_low_4
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_4 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 322; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 318 - 671
Target Start/End: Complemental strand, 45540468 - 45540115
Alignment:
| Q |
318 |
gaactaccaatgtttgtgtcatcctcaacagtgtcgttggttgcctcacttggtcctaggaatggattttggaacgatgacgacaatgatgtcacggagg |
417 |
Q |
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| T |
45540468 |
gaactaccaatgtttgtgtcatcctcaacagtgtcgttggttgcctcacttggtcctatgaatggattttggaacgatgacgacaatgatgtcacggggg |
45540369 |
T |
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| Q |
418 |
cttggttgatgtctggtatatgagaatgagcttccaaaggattgttagatgctctcccaagctcttgttctgttaacgggggtggtggttgataagcatt |
517 |
Q |
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| T |
45540368 |
cttggttgatgtctggtatatgagaatgagcttccaaaggattgttagatgctctcccaagctcttgttctgttaacggaggtggtggttgataagcatt |
45540269 |
T |
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| Q |
518 |
tgtagcatgaccagttcgtaaatcaatattgactttgttgtcacctttaacttccatcggataacaacgtcaagtgaacaaggtttgaagatgccgatgg |
617 |
Q |
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| T |
45540268 |
tgtggcatgaccagttcgtaaatcaatattgactttgttgtcacctttaacttccatcggctaacaacgtcaagtgaacaaggtttgaagattccgatgg |
45540169 |
T |
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| Q |
618 |
aaattatggtaagctgtagaatcaaatgttacagcaagaacccgttaaaacacc |
671 |
Q |
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| T |
45540168 |
aaattatggtaagctgtaaaatcaaatgttacaacaagaacccgttaaaacacc |
45540115 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 292; E-Value: 1e-163
Query Start/End: Original strand, 17 - 320
Target Start/End: Complemental strand, 45540808 - 45540505
Alignment:
| Q |
17 |
tgtgacatttatagaagcgcacgtttgttcttggtttaatggttctaaagttggaaaagatgatgtccccgtatggatagtatcatccactccctgttgt |
116 |
Q |
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| T |
45540808 |
tgtgacatttatagaagcgcacgtttgttcttggtttaatgattctaaagttggaaaagatgatgtccctgtatggatagtatcatccactccctgttgt |
45540709 |
T |
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| Q |
117 |
cctttctcaatttctttaaaggggtgatgtgattcaacatttgttgatacaatatcacatggagatggctgggtttgccatgatttaactacatcatcgg |
216 |
Q |
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| T |
45540708 |
cctttctcaatttctttaaaggggtgatgtgattcaacatttgttgatacaatatcacatggagatggctgggtttgccatgatttaactacatcatcgg |
45540609 |
T |
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| Q |
217 |
agtcactgttatttgtatttgttttctcattgaatgaactctcttgcgacaattcatatgtggatgttggtgaattgagatttgaaataacattagttga |
316 |
Q |
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| T |
45540608 |
agtcactgttatttgtatttgttttctcattgaatgaactttcttgcgacaattcatatgtggatgttggtgaattgagatttgaaataacattagttga |
45540509 |
T |
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| Q |
317 |
agaa |
320 |
Q |
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|||| |
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| T |
45540508 |
agaa |
45540505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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