View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_41 (Length: 256)
Name: NF6745_low_41
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 40127592 - 40127827
Alignment:
| Q |
1 |
tgaagcccaagtccatcagtaccaccgatatctctgaaaacaagcctggtcgatccgttcctatcacctctatggcaacatttgcttcttgtggtccctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40127592 |
tgaagcccaagtccatcagtaccaccgatatctctgaaaacaagcctggtcgatccgttcctatcacctctatggcaacatttgcttcttgtggtccctt |
40127691 |
T |
|
| Q |
101 |
gcaacagtgttgcactgtttcacttgaagtttctccgttgctttttgccgtgcactcacatagtgtctgcaaaatctcaaattttgttagattctatcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
40127692 |
gcaacagtgttgcactgtttcacttgaagtttctccgttgctttttgccgtgcactcacatagtatctgcaaaatctcaaattttgttagattctatcat |
40127791 |
T |
|
| Q |
201 |
atgaaaatgaaattatgaatcgtgtatttttctttg |
236 |
Q |
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||||||||||||||||||||||||||||||| |||| |
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| T |
40127792 |
atgaaaatgaaattatgaatcgtgtatttttgtttg |
40127827 |
T |
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