View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6745_low_42 (Length: 255)
Name: NF6745_low_42
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 8705363 - 8705216
Alignment:
| Q |
1 |
ttgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaaaccttttactcttagcatacttataat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8705363 |
ttgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaaaccttttactcttggcatacttataat |
8705264 |
T |
|
| Q |
101 |
caataggacacnnnnnnnnccattctgggtcatctgattttacaaccg |
148 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
8705263 |
caataggacacaaaaaaaaccattctgggtcatctgattttacaaccg |
8705216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 143
Target Start/End: Original strand, 14372364 - 14372506
Alignment:
| Q |
1 |
ttgctacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaaaccttttactcttagcatacttataat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||| ||||||||||||||||| |||||||| |||| |
|
|
| T |
14372364 |
ttgctacccctaaccttaatcttccggtcctttccagtagctttccaaaaaccattttttgttgtccttttaaaccttttactctttgcatacttgtaat |
14372463 |
T |
|
| Q |
101 |
caataggacacnnnnnnnnccattctgggtcatctgattttac |
143 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||| |
|
|
| T |
14372464 |
caataggacacaagaaaaaccattctgggtcatctgattttac |
14372506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 107
Target Start/End: Complemental strand, 8723794 - 8723692
Alignment:
| Q |
5 |
tacccctaaccttaatcttccggtccttaccagtagctttccaaaaaccagtatttgttgtcctcttaaaccttttactcttagcatacttataatcaat |
104 |
Q |
| |
|
||||||||| | |||| || |||||| | ||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| || ||||| |
|
|
| T |
8723794 |
tacccctaatcctaatgttacggtccattccagtagctttccaaaaaccattattagttgtccttttaaaccttttactctttgcatacttgtattcaat |
8723695 |
T |
|
| Q |
105 |
agg |
107 |
Q |
| |
|
||| |
|
|
| T |
8723694 |
agg |
8723692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 8740406 - 8740329
Alignment:
| Q |
34 |
ccagtagctttccaaaaaccagtatttgttgtcctcttaaaccttttactcttagcatacttataatcaataggacac |
111 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||| ||||||||||||||||| |||||||| || |||||||||||| |
|
|
| T |
8740406 |
ccagtagctttccaaaaaccattattcgttgtccttttaaaccttttactctttgcatacttgtattcaataggacac |
8740329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 8705183 - 8705145
Alignment:
| Q |
181 |
ggttgcatttttatgagaaaataatgaagggtttgtttg |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8705183 |
ggttgcatttttatgagaaaataatgaagggtttgtttg |
8705145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University