View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_43 (Length: 251)
Name: NF6745_low_43
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 13 - 234
Target Start/End: Original strand, 11495811 - 11496032
Alignment:
| Q |
13 |
catcaattggctgataacatgtgagaatggaattatcgtaatgaaattgctattatcatctaaatgtcttgattccaccgaaaaaggatatcctcttaac |
112 |
Q |
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| T |
11495811 |
catcaattggctgataacatgtgagaatggaattatcattatgaaattgctattatcatctaaatgtcttgattccaccgaaaaaggatatcctcttaac |
11495910 |
T |
|
| Q |
113 |
tcaagttcagttaaggaaggaagttggtcaggtatgtctcctctcagtttcgggcacttacttagtaacagactttttagactaggaaaatttgtcgttg |
212 |
Q |
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||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11495911 |
tcaagttcagttaaggaaggaagattgtcaggtatgtctcctctcagtttcgggcacttacttagtaacagactttttagactaggaaaatttgtcgttg |
11496010 |
T |
|
| Q |
213 |
tacctccaatcaagttccattc |
234 |
Q |
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|||||||||| ||||||||||| |
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| T |
11496011 |
tacctccaatgaagttccattc |
11496032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 105 - 201
Target Start/End: Complemental strand, 5967642 - 5967543
Alignment:
| Q |
105 |
ctcttaactcaagttcagttaaggaaggaagttggtcaggtatgtctcct---ctcagtttcgggcacttacttagtaacagactttttagactaggaaa |
201 |
Q |
| |
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|||| |||||| |||||||||| ||||||| || ||||||||||| |||| |||||||| || |||||||||||| ||| | |||||||||||||||| |
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| T |
5967642 |
ctctcaactcaggttcagttaaagaaggaaatttgtcaggtatgtttcctaatctcagttttggacacttacttagtgacaaagtttttagactaggaaa |
5967543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 105 - 228
Target Start/End: Complemental strand, 2921354 - 2921228
Alignment:
| Q |
105 |
ctcttaactcaagttcagttaaggaaggaagttggtcaggtatgtctcct---ctcagtttcgggcacttacttagtaacagactttttagactaggaaa |
201 |
Q |
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| T |
2921354 |
ctcttaactccattttagataaggaaggaaatttgtcaattatgtttcctacactcagtttcgggcacctacttagtgacaaagtttttagactaagaaa |
2921255 |
T |
|
| Q |
202 |
atttgtcgttgtacctccaatcaagtt |
228 |
Q |
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||||| | ||||||||||||||||| |
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| T |
2921254 |
ctttgtattcgtacctccaatcaagtt |
2921228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 234
Target Start/End: Original strand, 910007 - 910054
Alignment:
| Q |
187 |
ttttagactaggaaaatttgtcgttgtacctccaatcaagttccattc |
234 |
Q |
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||||||||||||||| | | | |||||||||||||||||||||||||| |
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| T |
910007 |
ttttagactaggaaactgtatagttgtacctccaatcaagttccattc |
910054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 13 - 231
Target Start/End: Complemental strand, 17313657 - 17313439
Alignment:
| Q |
13 |
catcaattggctgataacatgtgagaatggaattatcgtaatgaaattgctattatcatctaaatgtcttgattccaccgaaaaaggatatcctcttaac |
112 |
Q |
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||||| ||||||||| ||||| ||||| |||||||| || ||||||||||||||||||||| |||||||||| |||||| |||||||||||||||||| |
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| T |
17313657 |
catcagttggctgattacatgagagaacggaattatagttatgaaattgctattatcatctgaatgtcttgactccaccagcaaaggatatcctcttaac |
17313558 |
T |
|
| Q |
113 |
tcaagttcagttaaggaaggaagttggtcaggtatgtctcctctcagtttcgggcacttacttagtaacagactttttagactaggaaaatttgtcgttg |
212 |
Q |
| |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||| |||| |
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| T |
17313557 |
tcaagttcagttaaggaaggaagtttgtcaggtatgtctcctctcagtttcgggcacttgcttagtaacaaactttttagactaggaaaatttgtagttg |
17313458 |
T |
|
| Q |
213 |
tacctccaatcaagttcca |
231 |
Q |
| |
|
|||||||||||| |||||| |
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|
| T |
17313457 |
tacctccaatcatgttcca |
17313439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 108 - 201
Target Start/End: Complemental strand, 18389847 - 18389751
Alignment:
| Q |
108 |
ttaactcaagttcagttaag---gaaggaagttggtcaggtatgtctcctctcagtttcgggcacttacttagtaacagactttttagactaggaaa |
201 |
Q |
| |
|
|||||||||||| ||||||| |||||||||| ||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
18389847 |
ttaactcaagtttagttaagcaggaaggaagtttgtcaggtatatttcctctcagtttcgggcacttacttagtaacaaactttttagactaggaaa |
18389751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 105 - 234
Target Start/End: Complemental strand, 5990352 - 5990220
Alignment:
| Q |
105 |
ctcttaactcaagttcagttaaggaaggaagttggtcaggtatgt---ctcctctcagtttcgggcacttacttagtaacagactttttagactaggaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||| |||| || |||||||||||||||||||||||||| ||| | |||||| | |||||| |
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| T |
5990352 |
ctcttaactcaagttcagttaaggaaggaaacttgtcagcaatgtttcctactctcagtttcgggcacttacttagtgacaaagtttttaaagaaggaaa |
5990253 |
T |
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| Q |
202 |
atttgtcgttgtacctccaatcaagttccattc |
234 |
Q |
| |
|
| ||| || |||||| |||||||||||||||| |
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| T |
5990252 |
ctctgtggtcgtaccttcaatcaagttccattc |
5990220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 105 - 234
Target Start/End: Complemental strand, 16448608 - 16448476
Alignment:
| Q |
105 |
ctcttaactcaagttcagttaaggaaggaagttggtcaggtatgtctcct---ctcagtttcgggcacttacttagtaacagactttttagactaggaaa |
201 |
Q |
| |
|
|||| ||||||||||||||||||||||||| || || ||| |||| |||| || ||||| ||||||||||| | ||| | | |||||| ||||||||| |
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| T |
16448608 |
ctctcaactcaagttcagttaaggaaggaaatttgttaggcatgtttcctacgctaagttttgggcacttactcaataataaagtttttaaactaggaaa |
16448509 |
T |
|
| Q |
202 |
atttgtcgttgtacctccaatcaagttccattc |
234 |
Q |
| |
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||||| |||||||||||| |||||| |||||| |
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|
| T |
16448508 |
ctttgttgttgtacctccattcaagtcccattc |
16448476 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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