View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_49 (Length: 238)
Name: NF6745_low_49
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_49 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 47286863 - 47287100
Alignment:
| Q |
10 |
atcaaggcaaatgtttttggtcctgtagttggaccaaatacatcgaatgatgcgtttgtgtttagcggcattaaaagcaaatattcaaagatacctgtat |
109 |
Q |
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| T |
47286863 |
atcaaggcaaatgtttttggtcctgtagttggaccaaatacatcggatgatgcgtttgtttttagcggcattaaaagtaaatattcaaagataccagtat |
47286962 |
T |
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| Q |
110 |
ttggaccaaatacattggatgatgtgtttgttttagcggcattaaaaataaatattcaaagatatggt----ctttacatt-aaggaagagttctcnnnn |
204 |
Q |
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| T |
47286963 |
ttggaccaaatacatcggatgatgtgtttgttttagcggcattaaaaataaatattcaaagatatggtctaactttacattaaaggaagagttctcaaaa |
47287062 |
T |
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| Q |
205 |
nnngtcaagtcaaat----atatattcaaaaaatataa |
238 |
Q |
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| T |
47287063 |
aaagtcaagtcaaatcaaaatatattcaaaaaatataa |
47287100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 193
Target Start/End: Original strand, 47286778 - 47286850
Alignment:
| Q |
125 |
tggatgatgtgtttgttttagcggcattaaaaataaatattcaaagatatggt----ctttacattaaggaag |
193 |
Q |
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| T |
47286778 |
tggatgatgtgtttgttttagcggcatcaaaaacaaatattcaaagatatggtctaactttacattaaggaag |
47286850 |
T |
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