View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_5 (Length: 670)
Name: NF6745_low_5
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 349 - 653
Target Start/End: Original strand, 32119463 - 32119767
Alignment:
| Q |
349 |
tatacgaaatgtgtacggtatcaaagtatggcatgtttgagaggagataatatcaaagttttacccgagaaagtagaaaggaagccggttgtggtaatga |
448 |
Q |
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| T |
32119463 |
tatacgaaatgtgtacggtatcaaagtctggcatgtttgagaggagataatatcaaagttttacccgagaaagtagaaaggaagccggtggtggtaatga |
32119562 |
T |
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| Q |
449 |
aggcaaccatgactaccaccaataacttaaccatatcgcaaccagcactggttcctcaaggattgtcggaattattagctgagatcatagcaagtattcg |
548 |
Q |
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| T |
32119563 |
aggcaaccatgactaccaccaataacttaaccatatcgcaaccagcactggttcctcaaggattgtcggaattattagctgagatcgtagcaagtattcg |
32119662 |
T |
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| Q |
549 |
caatgctatgctggtggttcttttccgaggtgctgtgattgacaggaagatcacacggaatttacatcctcaaatgctcattgaaaaggtaattctacaa |
648 |
Q |
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| T |
32119663 |
caatgctatgctggtggttcttttccgaggtgctgtgattgacaggaagatcacacggaatttacatcctcaaatgctcattgaaaaggtaattctacaa |
32119762 |
T |
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| Q |
649 |
ctttt |
653 |
Q |
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||||| |
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| T |
32119763 |
ctttt |
32119767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 9 - 309
Target Start/End: Original strand, 32119127 - 32119423
Alignment:
| Q |
9 |
aatattggaaacacgaaattggcatgtgatgattcgctgagtccgttggaaatttcagcttcagcatacttccaaactactcacctaataatcaaaatat |
108 |
Q |
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| T |
32119127 |
aatattggaaacacgaaattggcatgtgatgattcgctgagtccgttggaaatttcagcttcagcatacttccaaactactcacctaataatcaaaatat |
32119226 |
T |
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| Q |
109 |
acctcgaatcttcatctctcgtgcatgatgcatgcatatatatttgtggtatgcattagcacacaccaacccctcttatatatataccattcaaattcta |
208 |
Q |
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| T |
32119227 |
acctcgaatcttcatctctcgtgcatgatgcatgcatatatatttgtggtatacattagcacacaccaa-ccctcttatatatataccattcaaattcta |
32119325 |
T |
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| Q |
209 |
gtaattggaattaatattttgaccaaactaattgttcaattcagttgagatcaatggcaacctctagattgttgcaacactctaaggtgccatttgacca |
308 |
Q |
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| T |
32119326 |
gtaattggaattaatattttgaccaaac---ttgttcaattcaattgagatcaatggcaacctctagattgttgcaacactctaaggttccatttgacca |
32119422 |
T |
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