View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_51 (Length: 236)
Name: NF6745_low_51
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_51 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 236
Target Start/End: Original strand, 33219055 - 33219279
Alignment:
| Q |
12 |
atgagtaccaaaacagaacacatagtttaatcaatggttacggtgccgaatcaaacaatacacatgaaaaaattacattccaaaactcatataatatagg |
111 |
Q |
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| T |
33219055 |
atgagtaccaaaacagaacacatagtttaatcaatggttacggtgccaaatcaaacaatacaaatgaaaaaattacatgccaaaactcacatacaatagg |
33219154 |
T |
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| Q |
112 |
attaagccatcaattatgataataatcgttaaaccatcccatgcactatagatcttctctaggcatgcaataatttcaggcatacttaaattttctttca |
211 |
Q |
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| T |
33219155 |
attaagccatcaattatgataataatcgttaaaccatcccatgcattatagatcttctctaggcatgcaataatttcaggcatacttaaattttctttca |
33219254 |
T |
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| Q |
212 |
aatcactcattcatattatattctc |
236 |
Q |
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| T |
33219255 |
aatcactcattcatattatattctc |
33219279 |
T |
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Back To:
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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 162 - 236
Target Start/End: Original strand, 33227571 - 33227645
Alignment:
| Q |
162 |
gatcttctctaggcatgcaataatttcaggcatacttaaattttctttcaaatcactcattcatattatattctc |
236 |
Q |
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||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
33227571 |
gatcttctctaggcatgcaatgatttcacgcatacttaatttttctttcaaatcactcattcatattatattctc |
33227645 |
T |
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