View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6745_low_57 (Length: 207)

Name: NF6745_low_57
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6745_low_57
NF6745_low_57
[»] chr6 (4 HSPs)
chr6 (82-199)||(31169432-31169549)
chr6 (30-66)||(31188855-31188891)
chr6 (30-66)||(31200662-31200698)
chr6 (27-69)||(31170905-31170947)
[»] chr8 (2 HSPs)
chr8 (135-196)||(9824636-9824698)
chr8 (147-196)||(33367060-33367109)
[»] chr4 (1 HSPs)
chr4 (161-199)||(27990218-27990256)
[»] chr3 (2 HSPs)
chr3 (162-199)||(3441957-3441994)
chr3 (147-207)||(31179133-31179193)


Alignment Details
Target: chr6 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 82 - 199
Target Start/End: Complemental strand, 31169549 - 31169432
Alignment:
Q  82 tatgtatagcgaatttgttttcacaaatttatcccgaggagtgctatttagttgcataaagcgagttttaaattgcggcattttaagtgtgttgacataa 181  Q
    |||||||| ||||||||||||||| |||||||||| ||||||  |||||||||||||||||||| |||||||||| ||||||||||||||||||||||||    
T  31169549 tatgtatatcgaatttgttttcacgaatttatcccaaggagtattatttagttgcataaagcgaattttaaattgaggcattttaagtgtgttgacataa 31169450  T
Q  182 aaacataaaaattaagaa 199  Q
    |||| |||||||||||||    
T  31169449 aaacttaaaaattaagaa 31169432  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 31188891 - 31188855
Alignment:
Q  30 ttttatcttatgtggaagtaactagtaagccgtgatt 66  Q
    ||||||||||||||||||||||||||||| |||||||    
T  31188891 ttttatcttatgtggaagtaactagtaagtcgtgatt 31188855  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 66
Target Start/End: Complemental strand, 31200698 - 31200662
Alignment:
Q  30 ttttatcttatgtggaagtaactagtaagccgtgatt 66  Q
    ||||||||||||||||||||||||||||| |||||||    
T  31200698 ttttatcttatgtggaagtaactagtaagtcgtgatt 31200662  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 31170947 - 31170905
Alignment:
Q  27 tgtttttatcttatgtggaagtaactagtaagccgtgattgag 69  Q
    ||||||||| |||||||||||| ||||| ||||||||||||||    
T  31170947 tgtttttattttatgtggaagtcactagaaagccgtgattgag 31170905  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 135 - 196
Target Start/End: Original strand, 9824636 - 9824698
Alignment:
Q  135 gcataaagcgagttttaaattgcggcatttt-aagtgtgttgacataaaaacataaaaattaa 196  Q
    ||||||| ||| |||||||||| |||||||| ||||||||||||| | |||||||||||||||    
T  9824636 gcataaaacgaattttaaattgaggcatttttaagtgtgttgacagagaaacataaaaattaa 9824698  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 33367060 - 33367109
Alignment:
Q  147 ttttaaattgcggcattttaagtgtgttgacataaaaacataaaaattaa 196  Q
    |||||||||| | ||||||||||||||||| ||| ||| |||||||||||    
T  33367060 ttttaaattgagacattttaagtgtgttgatatagaaatataaaaattaa 33367109  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 161 - 199
Target Start/End: Original strand, 27990218 - 27990256
Alignment:
Q  161 attttaagtgtgttgacataaaaacataaaaattaagaa 199  Q
    ||||||||||||||||||| |||||||||||| ||||||    
T  27990218 attttaagtgtgttgacatgaaaacataaaaagtaagaa 27990256  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 162 - 199
Target Start/End: Complemental strand, 3441994 - 3441957
Alignment:
Q  162 ttttaagtgtgttgacataaaaacataaaaattaagaa 199  Q
    |||||||||| ||||||| |||||||||||||||||||    
T  3441994 ttttaagtgtcttgacatgaaaacataaaaattaagaa 3441957  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 207
Target Start/End: Complemental strand, 31179193 - 31179133
Alignment:
Q  147 ttttaaattgcggcattttaagtgtgttgacataaaaacataaaaattaagaaaattaaat 207  Q
    |||||||||| |||||||||||| | |||| ||| |||||| ||| ||||||||| |||||    
T  31179193 ttttaaattgaggcattttaagtatattgatatagaaacattaaatttaagaaaactaaat 31179133  T

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