View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_6 (Length: 573)
Name: NF6745_low_6
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 525; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 12 - 554
Target Start/End: Original strand, 50121667 - 50122206
Alignment:
| Q |
12 |
gaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaataaaagaacaccatgt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
50121667 |
gaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaacaaaagaacaccatgt |
50121766 |
T |
|
| Q |
112 |
gcataaggttttccaccataatttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctgatatatcagttgtataca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50121767 |
gcataaggttttccaccataatttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctgatatatcagttgtataca |
50121866 |
T |
|
| Q |
212 |
aagtgtaaggatcatttggatgtaacttcattccatttggttgtgtgttctctcctaaaccatacaaagaagcatttttgggcaatttggtagaaatttc |
311 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50121867 |
aagtgtaaggatcatttggatgtaacttcattccatttggttgtgtgttctctcctaaaccatacaaagaagcatttttgggcaatttggtagaaatttc |
50121966 |
T |
|
| Q |
312 |
taagtattggtctttgaagactaaaggacgaaatgagtctgactcattagaataattggagtcaaaaagagtatcaccattggacttccttttcactgca |
411 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50121967 |
taagtattggtctttgaagactaaaggacgaaatgagtctgactcattagaataattggagtcaaaaagagtatcaccattggacttccttttcactgca |
50122066 |
T |
|
| Q |
412 |
aagctaaatggatcagaagtgtaactgaaaacaagctcagagcttgagtactctgacactgataatgaattcttcttcaacctcttaataatgttcaact |
511 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
50122067 |
aagctaaatggatcagaagtgtaactgaaaacaagctcagagcttgagtactctgacactgataatgaattcttcttcaacctct---taatgttcaact |
50122163 |
T |
|
| Q |
512 |
taagaggtggtggttgctcccttggcaaaagattgtagggaac |
554 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50122164 |
taagaggtggtggttgctcccttggcaaaagattgtagggaac |
50122206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 12 - 544
Target Start/End: Original strand, 50112086 - 50112615
Alignment:
| Q |
12 |
gaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaataaaagaacaccatgt |
111 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| || | |||||||||| |
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| T |
50112086 |
gaagtaaaaatcaagtacccctccaataatcttgtacgtcaaagaggtccctttgtaaaacacatccattccattgctattcaacaacaaaacaccatgt |
50112185 |
T |
|
| Q |
112 |
gcataaggttttccacc---ataatttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctgatatatcagttgtat |
208 |
Q |
| |
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|||| ||| || ||||| || |||||| |||||||||||||||||||| || ||||||| ||||| ||||| ||||| |||| || |||||| |||| |
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| T |
50112186 |
gcattaggcttgccaccttcatgatttctaagatccatgtatacaggatgagacccatatagatcagtgttgagattaatggctgctacatcagtggtat |
50112285 |
T |
|
| Q |
209 |
acaaagtgtaaggatcatttggatgtaacttcattccatttggttgtgtgttctctcctaaaccatacaaagaagcatttttgggcaatttggtagaaat |
308 |
Q |
| |
|
||||||| ||||||||||| |||| ||||| || |||| ||| |||| ||||||||| |||||||||| |||||||| |||||| | ||| |||||||| |
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| T |
50112286 |
acaaagtataaggatcattaggatacaactttatcccatgtggctgtgagttctctcccaaaccatacagagaagcatctttgggaagtttagtagaaat |
50112385 |
T |
|
| Q |
309 |
ttctaagtattggtctttgaagactaaaggacgaaatgagtctgactcattagaataattggagtcaaaaagagtatcaccattggacttccttttcact |
408 |
Q |
| |
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||| |||||||||||||||||||| || |||| ||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50112386 |
ttccaagtattggtctttgaagaccaatggaccaaatgggtctgactcattagaat---tggagtcaaaaagagtatcaccattggacttccttttcact |
50112482 |
T |
|
| Q |
409 |
gcaaagctaaatggatcagaagtgtaactgaaaacaagctcagagcttgagtactctgacactgataatgaattcttcttcaacctcttaataatgttca |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
50112483 |
gcaaagctaaatggatcagaagtgtaactgaaaacaagctcagagcttgagtgctctgacactgataatgaattcttcttcaacctct---taatgttct |
50112579 |
T |
|
| Q |
509 |
acttaagaggtggtggttgctcccttggcaaaagat |
544 |
Q |
| |
|
||| | ||||| |||||||||||| |||||||||| |
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|
| T |
50112580 |
gcttcaaaggtgatggttgctccctaggcaaaagat |
50112615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 9e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 7 - 329
Target Start/End: Complemental strand, 23931122 - 23930800
Alignment:
| Q |
7 |
gagatgaagtaaaaatcaagtattcctccaataatcttgtatgtcaaagagttccctttgtaaaacacatccattccattgctattcaataaaagaacac |
106 |
Q |
| |
|
|||| |||||||||||||| | || ||||||| ||| || |||||||| | ||||| |||||||||||||||||||| |||||||| || | |||| |
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|
| T |
23931122 |
gagaagaagtaaaaatcaaaaacaccaccaataaccttataagtcaaagaagttcctttataaaacacatccattccattactattcaacaacaaaacag |
23931023 |
T |
|
| Q |
107 |
catgtgcataaggttttccaccataatttctgagatccatgtatacaggatgtgatccatataaatcagaattgaggttaatagctgatatatcagttgt |
206 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||| |||||||| || | |||||| |||||||||||||||| ||| || ||||||||||| ||||| ||||| |
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|
| T |
23931022 |
catgtgcagaagcttttccaccattatttctcagatccatatacataggatgagatccatataaatcagcattaagattaatagctgaaatatctgttgt |
23930923 |
T |
|
| Q |
207 |
atacaaagtgtaaggatcatttggatgtaacttcattccatttggttgtgtgttctctcctaaaccatacaaagaagcatttttgggcaatttggtagaa |
306 |
Q |
| |
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||| ||||| ||||| ||| |||||| ||| || || |||| ||||||||| |||||||| |||||||| ||||| |||| ||| || ||||| || ||| |
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| T |
23930922 |
atataaagtataagggtcacttggatataatttaatcccatgtggttgtgtattctctcccaaaccatataaagatgcatctttaggtaattttgttgaa |
23930823 |
T |
|
| Q |
307 |
atttctaagtattggtctttgaa |
329 |
Q |
| |
|
|| || | |||||||||||||| |
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|
| T |
23930822 |
atctcaagatattggtctttgaa |
23930800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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