View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6745_low_7 (Length: 572)
Name: NF6745_low_7
Description: NF6745
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6745_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 20 - 561
Target Start/End: Original strand, 37199719 - 37200240
Alignment:
| Q |
20 |
aatgtcaagttttctttttataagaaaatagtgtttctatgtagcaaccatcatcctatggaaaacaactatattgtagaagctgaagctccacattgga |
119 |
Q |
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| T |
37199719 |
aatgtcaagttttctttttataagaaaatagtgtttctatgtagcaaccatcatcctatggaaaacaactatattgtagaagctgaagctccacattgga |
37199818 |
T |
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| Q |
120 |
caagttttatctacaattggttggttttattccataaactcataattaaattcattgtttactttgttaaagtttcttcaacagatagatatcttagtct |
219 |
Q |
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| T |
37199819 |
caagttt--------------------tattccataaactcataattaaattcattgtttactttgttaaagtttcttcaacagatagatatcttagtct |
37199898 |
T |
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| Q |
220 |
tctcattttgggcattgtaggtgaagagtttttatcttatgcttgctagttatctacttggctgttgtaacaaaacacagacggtatggtgagcattggt |
319 |
Q |
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| T |
37199899 |
tctcattttgggcattgtaggtgaagagtttttatcttatgcttgctagttatctacttggctgttgtaacaaaacacagacgatatggtgagcattggt |
37199998 |
T |
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| Q |
320 |
tattgtaatcttgttatatcctatcgaaaacacaacttgcatattttggtcttgtaaaacttatcttgttacctgcattcacatatccttcaatactgaa |
419 |
Q |
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| T |
37199999 |
tattgtaatcttgttatatcctgtcgaaaacacaacttgcatattttggtcttgtaaaacttaccttgttacctgcattcacatatccttcaatactgaa |
37200098 |
T |
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| Q |
420 |
aagacatgatacatgtctaatgtaaatcaaggttgatacatatgtgcacatttatgcatacatatgnnnnnnnnnnnnnnnnnnaaacaaaaccttcata |
519 |
Q |
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| T |
37200099 |
aagacatgatacatgtctaatgtaaatcaaggttgatacatatgtgcacatttatgcatacatatgtttttatatttagtttttaaacaacaccttcata |
37200198 |
T |
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| Q |
520 |
tcaccccaaaacctcaaaggcaacccttcaactaattgatgt |
561 |
Q |
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| T |
37200199 |
tcaccccaaaacctcaaaggcaacccttcaactaattgatgt |
37200240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 80 - 209
Target Start/End: Original strand, 37216059 - 37216197
Alignment:
| Q |
80 |
gaaaacaactatattgtagaagctgaagctccacattggacaagttttatctac---------aattggttggttttattccataaactcataattaaat |
170 |
Q |
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| T |
37216059 |
gaaaacaactatagtttacaagctgaagctccacattggacaagttttatctactgctcctacaattggtggattttattccataaactcgtaattaaat |
37216158 |
T |
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| Q |
171 |
tcattgtttactttgttaaagtttcttcaacagatagat |
209 |
Q |
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| T |
37216159 |
tcattgtttccattgttgaaatttctcaaacagatagat |
37216197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 37213972 - 37214055
Alignment:
| Q |
142 |
ggttttattccataaactcataattaaattcattgtttactttgttaaagtttcttcaacagatagatatcttagtcttctcat |
225 |
Q |
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| T |
37213972 |
ggttttattccataaactcataattaaattcattgtttcctttgtaaatttttcttaaacagataaatatgtcggtcttctcat |
37214055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 280
Target Start/End: Original strand, 37216268 - 37216305
Alignment:
| Q |
243 |
aagagtttttatcttatgcttgctagttatctacttgg |
280 |
Q |
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| T |
37216268 |
aagagtttttagcttatgcttgctagttatctacttgg |
37216305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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