View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6746_high_1 (Length: 563)

Name: NF6746_high_1
Description: NF6746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6746_high_1
NF6746_high_1
[»] chr5 (2 HSPs)
chr5 (250-545)||(4016479-4016769)
chr5 (64-129)||(4016887-4016952)
[»] chr1 (4 HSPs)
chr1 (428-539)||(45597512-45597623)
chr1 (298-436)||(45598507-45598644)
chr1 (60-128)||(45599821-45599888)
chr1 (247-300)||(45599644-45599697)
[»] chr4 (3 HSPs)
chr4 (64-129)||(17541729-17541794)
chr4 (256-330)||(17541926-17542000)
chr4 (360-441)||(17542063-17542144)


Alignment Details
Target: chr5 (Bit Score: 137; Significance: 3e-71; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 250 - 545
Target Start/End: Complemental strand, 4016769 - 4016479
Alignment:
Q  250 gcattcattctttttacgaatgtttaatcagttttttcttcttaaccagtggtacatattcattgtaaagtttgctctaagnnnnnnnngaaagtaaata 349  Q
    |||||||||||||||||||||||||||| | || ||| || |||| | ||||||||| ||||||||||||||||||||||          ||||||||||    
T  4016769 gcattcattctttttacgaatgtttaattaattatttttt-ttaatcggtggtacatcttcattgtaaagtttgctctaaaaaaaa----aaagtaaata 4016675  T
Q  350 taacgtatgcaaatataacttgggaaaattaccaccaaaatgaaaatgttgtgtaaatgattttcttcagttttactatttg-tattgtactttgtggaa 448  Q
    ||||||| |||||| ||||||||||||||||||   ||||||||||||| ||||||||| ||||||| || |||| ||||||  || |||||||||||||    
T  4016674 taacgtaagcaaatgtaacttgggaaaattaccttaaaaatgaaaatgtagtgtaaatgcttttctttagctttagtatttgaaatagtactttgtggaa 4016575  T
Q  449 attgaagtcgtatacatactttacaatttataaatctgtggtacattgagttgcccttgcagaatttggttcattgaatttttaatatcatggatct 545  Q
    |||||||||||||||||||||||||| | ||||| ||| |||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||    
T  4016574 attgaagtcgtatacatactttacaa-tcataaacctggggtacattaagttgcccttgtaaaatttggttcattgaatttttaatatcatggatct 4016479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 64 - 129
Target Start/End: Complemental strand, 4016952 - 4016887
Alignment:
Q  64 tgatatttgattggtgttcgtgttaaactctattttattacatattaataattcaataactttcgg 129  Q
    |||||||||||||||| || |||||||||| ||||||||||||||||||||||||||| |||||||    
T  4016952 tgatatttgattggtggtcctgttaaactcaattttattacatattaataattcaatagctttcgg 4016887  T

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Target: chr1 (Bit Score: 92; Significance: 2e-44; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 428 - 539
Target Start/End: Complemental strand, 45597623 - 45597512
Alignment:
Q  428 tttgtattgtactttgtggaaattgaagtcgtatacatactttacaatttataaatctgtggtacattgagttgcccttgcagaatttggttcattgaat 527  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||| | |||||||||||    
T  45597623 tttgtattgtactttgtggaaattgaagtcgtatacatactttacaatttataaacctgtggtatattgagttgcccttgcaaaatctagttcattgaat 45597524  T
Q  528 ttttaatatcat 539  Q
    ||||||||||||    
T  45597523 ttttaatatcat 45597512  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 298 - 436
Target Start/End: Complemental strand, 45598644 - 45598507
Alignment:
Q  298 gtggtacatattcattgtaaagtttgctctaagnnnnnnnngaaagtaaatataacgtatgcaaatataacttgggaaaattaccaccaaaatgaaaatg 397  Q
    ||||||||| |||||||||||||||||||||||        |||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||||    
T  45598644 gtggtacatcttcattgtaaagtttgctctaagaaaaaaa-gaaagtaaatataatgtaagcaaatataacttgggaaaattaccacctaaatgaaaatg 45598546  T
Q  398 ttgtgtaaatgattttcttcagttttactatttgtattg 436  Q
     |||||||||||||||||| |||||||||||||||||||    
T  45598545 ctgtgtaaatgattttctttagttttactatttgtattg 45598507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 60 - 128
Target Start/End: Complemental strand, 45599888 - 45599821
Alignment:
Q  60 tagttgatatttgattggtgttcgtgttaaactctattttattacatattaataattcaataactttcg 128  Q
    ||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  45599888 tagttgatatttgattggtgttcgtgttaaactct-ttttgttacatattaataattcaataactttcg 45599821  T

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Target: chr1; HSP #4
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 247 - 300
Target Start/End: Complemental strand, 45599697 - 45599644
Alignment:
Q  247 tacgcattcattctttttacgaatgtttaatcagttttttcttcttaaccagtg 300  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||    
T  45599697 tacgcattcattctttttacgaatgtttaattagttttttcttcttaactagtg 45599644  T

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Target: chr4 (Bit Score: 58; Significance: 4e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 64 - 129
Target Start/End: Original strand, 17541729 - 17541794
Alignment:
Q  64 tgatatttgattggtgttcgtgttaaactctattttattacatattaataattcaataactttcgg 129  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  17541729 tgatatttgattggtgtttgtgttaaactctattttattacatattaataattcaatacctttcgg 17541794  T

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Target: chr4; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 17541926 - 17542000
Alignment:
Q  256 attctttttacgaatgtttaatcagttttttcttcttaaccagtggtacatattcattgtaaagtttgctctaag 330  Q
    |||||||||||||||||||||| | |||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  17541926 attctttttacgaatgtttaattaattttttcttcttaatcagtggtacatcttcatcgtaaagtttgctctaag 17542000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 360 - 441
Target Start/End: Original strand, 17542063 - 17542144
Alignment:
Q  360 aaatataacttgggaaaattaccaccaaaatgaaaatgttgtgtaaatgattttcttcagttttactatttgtattgtactt 441  Q
    ||||||||||||||||||||||||||||||||||||| | ||||||| ||||||||| |||||||  |||||||| ||||||    
T  17542063 aaatataacttgggaaaattaccaccaaaatgaaaatttagtgtaaaagattttctttagttttagcatttgtatggtactt 17542144  T

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