View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6746_high_2 (Length: 489)
Name: NF6746_high_2
Description: NF6746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6746_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 449; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 11 - 483
Target Start/End: Original strand, 18163946 - 18164418
Alignment:
| Q |
11 |
tggacatcaagagagaggtagagacgccacatatccacccaaaatcttaatacattaggtgtatgagtcacctctctaattatccactttttcaccattc |
110 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18163946 |
tggacaacaagagagaggtagagacgccacatctccacccaaaatcttaatacattaggtgtatgagtcacctctctaattatccactttttcaccattc |
18164045 |
T |
|
| Q |
111 |
atagacgatctgaacttaaccactcacaagtgaaccgagtattttattccaatttttcatttaggttagcagtgatacaatgcatgtgaaaatgaagcaa |
210 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18164046 |
atagacgatgtgaacttaaccactcacacgtgaaccgagtattttattccaatttttcatttaggttagcagtgatacaatgcatgtgaaaatgaagcaa |
18164145 |
T |
|
| Q |
211 |
aacaaccagagctagcaacaagtttgattattatgtagttttgtattgtttctttcattcctttgggtgtgcattcattatgatctgcatctagtataag |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18164146 |
aacaaccagagctagcaacaagtttgattattatgtagttttgtattgtttctttcattcctttgggtgtgcattcattatgatctgcatctagtataag |
18164245 |
T |
|
| Q |
311 |
catgaaaagaaattttcaaaattattgcatagtaaaaggagattagcaacatctccaatgagattttatgtaatctgtgtgtatctgaatactataaatt |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18164246 |
catgaaaagaaattttcaaaattattgcatagtaaaaggagattagcaacatctccaatgagattttatgtaatctgtgtgtatctgaatactataaatt |
18164345 |
T |
|
| Q |
411 |
ctagttttatatctaaactattaactcaaagtttcattgtcgccggaaagaaaaaacagatgatgtccatctc |
483 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
18164346 |
ctagttttatatctaaactattaactcaaagtttcattgtcgccggaaagaaaaaacagatgatcaccatctc |
18164418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 31 - 87
Target Start/End: Complemental strand, 11200038 - 11199982
Alignment:
| Q |
31 |
gagacgccacatatccacccaaaatcttaatacattaggtgtatgagtcacctctct |
87 |
Q |
| |
|
|||||||||||| ||||||||||| ||||| ||||||| |||||||||||||||| |
|
|
| T |
11200038 |
gagacgccacatctccacccaaaaccttaaggcattaggcatatgagtcacctctct |
11199982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 31 - 87
Target Start/End: Original strand, 28296070 - 28296126
Alignment:
| Q |
31 |
gagacgccacatatccacccaaaatcttaatacattaggtgtatgagtcacctctct |
87 |
Q |
| |
|
||||| |||||| ||||||||||| ||||| | ||||||| |||| ||||||||||| |
|
|
| T |
28296070 |
gagacaccacatctccacccaaaaccttaagagattaggtatatgggtcacctctct |
28296126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University