View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6746_high_5 (Length: 202)

Name: NF6746_high_5
Description: NF6746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6746_high_5
NF6746_high_5
[»] scaffold0226 (1 HSPs)
scaffold0226 (1-108)||(3515-3622)
[»] chr5 (2 HSPs)
chr5 (1-111)||(34657071-34657180)
chr5 (13-111)||(20934327-20934425)
[»] scaffold0059 (1 HSPs)
scaffold0059 (1-105)||(39181-39285)
[»] chr7 (4 HSPs)
chr7 (1-111)||(7157650-7157759)
chr7 (13-111)||(15932651-15932749)
chr7 (13-111)||(15940993-15941091)
chr7 (1-111)||(47921899-47922010)
[»] chr3 (3 HSPs)
chr3 (13-111)||(11177763-11177861)
chr3 (26-62)||(3793419-3793455)
chr3 (26-62)||(3831604-3831640)
[»] scaffold1661 (1 HSPs)
scaffold1661 (13-111)||(189-287)
[»] scaffold0029 (1 HSPs)
scaffold0029 (13-111)||(88679-88777)
[»] chr8 (1 HSPs)
chr8 (13-111)||(19901856-19901954)
[»] chr1 (1 HSPs)
chr1 (24-62)||(17951119-17951157)
[»] chr4 (2 HSPs)
chr4 (13-108)||(11164086-11164180)
chr4 (24-62)||(50881733-50881771)
[»] scaffold0267 (1 HSPs)
scaffold0267 (26-62)||(8367-8403)


Alignment Details
Target: scaffold0226 (Bit Score: 84; Significance: 4e-40; HSPs: 1)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 1 - 108
Target Start/End: Complemental strand, 3622 - 3515
Alignment:
Q  1 atttataggctgaaatctgcccggaagtgcttctgatcatgtctcaagtagtggagaaaatgaaagaactgggcaaattgcttctgaaaagtggggaaag 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||||||||||| ||||||||||    
T  3622 atttataggctgaaatctgccctgaagtgcttctgatcatgtctcaagtagtggagaaaatggaggaagtgggcaaactgcttctgaaatgtggggaaag 3523  T
Q  101 aattggtc 108  Q
    ||||||||    
T  3522 aattggtc 3515  T

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Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 34657180 - 34657071
Alignment:
Q  1 atttataggctgaaatctgcccggaagtgcttctgatcatgtctcaagtagtggagaaaatgaaagaactgggcaaattgcttctgaaaagtggggaaag 100  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||| ||||||||||    
T  34657180 atttataggctgaaatctgcctg-aagtgcttctgatcatgtctcaagtagtggagaaaatgaaggaagtgggcaaactgcttctgaaacgtggggaaag 34657082  T
Q  101 aattggtcagg 111  Q
    |||||||||||    
T  34657081 aattggtcagg 34657071  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 20934327 - 20934425
Alignment:
Q  13 aaatctgcccggaagtgcttctgatcatgtctcaagtagtggagaaaatgaaagaactgggcaaattgcttctgaaaagtggggaaagaattggtcagg 111  Q
    |||||||| | ||||||||||||||||| |||||||||||||||||||||||  || |||||||| ||||||||||| ||||||||||||| |||||||    
T  20934327 aaatctgctctgaagtgcttctgatcatatctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaataggtcagg 20934425  T

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Target: scaffold0059 (Bit Score: 81; Significance: 2e-38; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 81; E-Value: 2e-38
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 39181 - 39285
Alignment:
Q  1 atttataggctgaaatctgcccggaagtgcttctgatcatgtctcaagtagtggagaaaatgaaagaactgggcaaattgcttctgaaaagtggggaaag 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | ||| |||||||| ||||||||||| ||||||||||    
T  39181 atttataggctgaaatctgccctgaagtgcttctgatcatgtctcaagtagtggagaaaatggaggaagtgggcaaactgcttctgaaatgtggggaaag 39280  T
Q  101 aattg 105  Q
    |||||    
T  39281 aattg 39285  T

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Target: chr7 (Bit Score: 75; Significance: 9e-35; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 9e-35
Query Start/End: Original strand, 1 - 111
Target Start/End: Complemental strand, 7157759 - 7157650
Alignment:
Q  1 atttataggctgaaatctgcccggaagtgcttctgatcatgtctcaagtagtggagaaaatgaaagaactgggcaaattgcttctgaaaagtggggaaag 100  Q
    ||||||||| ||||||||||| | |||||| ||||||||||||||||||||||||||||| ||| ||| |||||||| ||||||||||||||||||||||    
T  7157759 atttataggttgaaatctgcctg-aagtgcgtctgatcatgtctcaagtagtggagaaaacgaaggaagtgggcaaactgcttctgaaaagtggggaaag 7157661  T
Q  101 aattggtcagg 111  Q
    |||||||||||    
T  7157660 aattggtcagg 7157650  T

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Target: chr7; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 15932749 - 15932651
Alignment:
Q  13 aaatctgcccggaagtgcttctgatcatgtctcaagtagtggagaaaatgaaagaactgggcaaattgcttctgaaaagtggggaaagaattggtcagg 111  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||||||||| ||||||||||||| |||||||    
T  15932749 aaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaataggtcagg 15932651  T

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Target: chr7; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 13 - 111
Target Start/End: Complemental strand, 15941091 - 15940993
Alignment:
Q  13 aaatctgcccggaagtgcttctgatcatgtctcaagtagtggagaaaatgaaagaactgggcaaattgcttctgaaaagtggggaaagaattggtcagg 111  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||||||||| ||||||||||||| |||||||    
T  15941091 aaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaataggtcagg 15940993  T

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Target: chr7; HSP #4
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 1 - 111
Target Start/End: Original strand, 47921899 - 47922010
Alignment:
Q  1 atttataggctgaaatctgcccggaagtgcttctgatcatgtctcaagtagtggagaaaatgaaagaactgggcaaattgcttctgaaaagt-ggggaaa 99  Q
    |||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |||||||  ||| ||||||||  |||||||||| || ||||||     
T  47921899 atttataggctgaaatctgccctgaagtgcttctgatcatgtcttaagtagtggaaaaaatgatggaagtgggcaaacggcttctgaaacgtgggggaag 47921998  T
Q  100 gaattggtcagg 111  Q
    ||||||||||||    
T  47921999 gaattggtcagg 47922010  T

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Target: chr3 (Bit Score: 67; Significance: 6e-30; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 11177763 - 11177861
Alignment:
Q  13 aaatctgcccggaagtgcttctgatcatgtctcaagtagtggagaaaatgaaagaactgggcaaattgcttctgaaaagtggggaaagaattggtcagg 111  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||||||||| ||||||||||||| |||||||    
T  11177763 aaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctgaaacgtggggaaagaataggtcagg 11177861  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 3793419 - 3793455
Alignment:
Q  26 agtgcttctgatcatgtctcaagtagtggagaaaatg 62  Q
    |||||||||||||||||||||||  ||||||||||||    
T  3793419 agtgcttctgatcatgtctcaagaggtggagaaaatg 3793455  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 3831604 - 3831640
Alignment:
Q  26 agtgcttctgatcatgtctcaagtagtggagaaaatg 62  Q
    |||||||||||||||||||||||  ||||||||||||    
T  3831604 agtgcttctgatcatgtctcaagaggtggagaaaatg 3831640  T

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Target: scaffold1661 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold1661
Description:

Target: scaffold1661; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 189 - 287
Alignment:
Q  13 aaatctgcccggaagtgcttctgatcatgtctcaagtagtggagaaaatgaaagaactgggcaaattgcttctgaaaagtggggaaagaattggtcagg 111  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||||||||| ||||| ||||||| |||||||    
T  189 aaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctgaaacgtgggaaaagaataggtcagg 287  T

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Target: scaffold0029 (Bit Score: 63; Significance: 1e-27; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 88679 - 88777
Alignment:
Q  13 aaatctgcccggaagtgcttctgatcatgtctcaagtagtggagaaaatgaaagaactgggcaaattgcttctgaaaagtggggaaagaattggtcagg 111  Q
    |||||||| | |||||||||||||||||||||||||||||||||||||||||  || |||||||| ||||||||||| ||||| ||||||| |||||||    
T  88679 aaatctgctctgaagtgcttctgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctgaaacgtgggaaaagaataggtcagg 88777  T

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Target: chr8 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 13 - 111
Target Start/End: Original strand, 19901856 - 19901954
Alignment:
Q  13 aaatctgcccggaagtgcttctgatcatgtctcaagtagtggagaaaatgaaagaactgggcaaattgcttctgaaaagtggggaaagaattggtcagg 111  Q
    |||||||| | |||||||||| ||||||||||||||||||||||||||||||  || |||||||| ||||||| ||| ||||||||||||| |||||||    
T  19901856 aaatctgctctgaagtgcttccgatcatgtctcaagtagtggagaaaatgaagaaagtgggcaaactgcttctaaaacgtggggaaagaataggtcagg 19901954  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 17951119 - 17951157
Alignment:
Q  24 gaagtgcttctgatcatgtctcaagtagtggagaaaatg 62  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  17951119 gaagtgcttctgatcatgtcccaagtagtggagaaaatg 17951157  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 13 - 108
Target Start/End: Complemental strand, 11164180 - 11164086
Alignment:
Q  13 aaatctgcccggaagtgcttctgatcatgtctcaagtagtggagaaaatgaaagaactgggcaaattgcttctgaaaagtggggaaagaattggtc 108  Q
    |||||||| | |||||||||||||||||||  | |||||||||||||||| | ||| || | ||| ||||| | ||| || |||||||||||||||    
T  11164180 aaatctgctctgaagtgcttctgatcatgttcctagtagtggagaaaatggaggaagtgagaaaactgcttttcaaacgt-gggaaagaattggtc 11164086  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 62
Target Start/End: Original strand, 50881733 - 50881771
Alignment:
Q  24 gaagtgcttctgatcatgtctcaagtagtggagaaaatg 62  Q
    ||||||| |||||||||||||||||| ||||||||||||    
T  50881733 gaagtgcctctgatcatgtctcaagtggtggagaaaatg 50881771  T

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Target: scaffold0267 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 62
Target Start/End: Original strand, 8367 - 8403
Alignment:
Q  26 agtgcttctgatcatgtctcaagtagtggagaaaatg 62  Q
    |||||||||||||||||||||||  ||||||||||||    
T  8367 agtgcttctgatcatgtctcaagaggtggagaaaatg 8403  T

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