View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6746_low_4 (Length: 466)
Name: NF6746_low_4
Description: NF6746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6746_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 372; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 6 - 448
Target Start/End: Original strand, 23379251 - 23379694
Alignment:
| Q |
6 |
acaatatgcatggtaaaggtcctatcatttgtgatgatggatttcaatggttctactagtagctaattagacatgctttgttttaaataatttttcttgc |
105 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
23379251 |
acaaaatgcatggtaaaggtcctatcatttgtcatgatggatttcaatggttctactagtagctaattagacatgctctgttttaaataatttttcttgc |
23379350 |
T |
|
| Q |
106 |
caaaagtgacaattcattttcaattcactggtgttgtagatcttattgcttattgttgatccattgcaatatgttgattgctatttggtttagttgaggg |
205 |
Q |
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| T |
23379351 |
caaaagtgacaattcattttcaattcaccggtgttgtagatcttattgcttattgttaatccattgcaatatgttgattgctatttggtttagttgaggg |
23379450 |
T |
|
| Q |
206 |
agcctccttcatggttactgtgagttgtatttggtaaacaaattttagcttcgtgttttatagt-cattggtcattgagtttgaatttccatcannnnnn |
304 |
Q |
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| T |
23379451 |
agcctccttcatggttactgtgagttgtatttgctaaacaaattttagcttcgtgctttatagtccattggtcattgagtttgaattttcatcatatttt |
23379550 |
T |
|
| Q |
305 |
nngctgccactaaaagtctgtgccaataacataatagtcattatggtgatgatgctcgtgtgtaccttcttagtacgagccttgaagcatttgagtttta |
404 |
Q |
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||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23379551 |
ttgctgccactaaaagtttgtgccaataacataatagtcattattgtgatgatgctcgtgtgtaccttcttagtacgagccttgaagcatttgagtttta |
23379650 |
T |
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| Q |
405 |
gcttggaaggaacaaatgatgtttatgtataagctatatgttct |
448 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23379651 |
gcttggaaggaacaaatgatgtttatgtataagctatatgttct |
23379694 |
T |
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