View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6746_low_7 (Length: 264)
Name: NF6746_low_7
Description: NF6746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6746_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 2842560 - 2842809
Alignment:
| Q |
1 |
gctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttcatgttctgtattattcgtacaatcttgcttaacaataggtaca |
100 |
Q |
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| T |
2842560 |
gctatgcaaatcatcacatgctcgatccttgtattcagtgtttttatccaactcttcatgttctgtattattggtacaatcttgcttaacaataagtaca |
2842659 |
T |
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| Q |
101 |
gtactttcgatctgtgatggatcatcacatgtttcaaatgaaagtggcgagcttcgtttccattcactaagccgcacctctgctgacttcgaatgcaact |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2842660 |
gtactttcgatctgtgatggatcatcacatgtttcaaatgaaagtggcgagcttcgtttccattcactaagccgcacctctgctgacttcgaatgcaact |
2842759 |
T |
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| Q |
201 |
cgcaactttctgtcaaactcatttgcctataagtttcaagttccttttcc |
250 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
2842760 |
cgcaactttctgtcaaactcatttgcctaaaagtttcaagttccttttcc |
2842809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 146
Target Start/End: Original strand, 2838645 - 2838679
Alignment:
| Q |
112 |
ctgtgatggatcatcacatgtttcaaatgaaagtg |
146 |
Q |
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|||||||||||||||||| |||||||||||||||| |
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| T |
2838645 |
ctgtgatggatcatcacaagtttcaaatgaaagtg |
2838679 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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