View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6746_low_8 (Length: 240)
Name: NF6746_low_8
Description: NF6746
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6746_low_8 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 160; Significance: 2e-85; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 240
Target Start/End: Original strand, 11712323 - 11712527
Alignment:
| Q |
18 |
cattttagtttgtaaatgtaatgcatggaactttactccaatgaattgattgcaattctaaacaggagttattttacgacatttcagaacttgagaaaaa |
117 |
Q |
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| T |
11712323 |
cattttagtttgtaaatgtaatgcatggaactttactccaatgaattgattgcaattctaaacaggagttattttgcgacatttcagaacttgag----- |
11712417 |
T |
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| Q |
118 |
ccacaaacatgagaaatgtagtaaatgtatgtacagtgcattaggtagaactacaggataataatcttctcatcaatggaagagttgaatttgaactctg |
217 |
Q |
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| T |
11712418 |
-------------aaatgtagtaaatgtatgtacagtgcattaggtagaactacaggataataatcttctcatcaatggaagagttgaatttgaactctg |
11712504 |
T |
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| Q |
218 |
taattatgtagactttcaattgt |
240 |
Q |
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| T |
11712505 |
taattatgtagactttcaattgt |
11712527 |
T |
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