View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6747_high_5 (Length: 415)

Name: NF6747_high_5
Description: NF6747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6747_high_5
NF6747_high_5
[»] chr2 (11 HSPs)
chr2 (16-238)||(40042171-40042390)
chr2 (343-395)||(40042459-40042511)
chr2 (281-324)||(40216440-40216483)
chr2 (271-318)||(40042390-40042437)
chr2 (255-324)||(3121615-3121684)
chr2 (246-322)||(32599358-32599434)
chr2 (351-398)||(4434625-4434672)
chr2 (255-322)||(13697075-13697142)
chr2 (255-324)||(4434698-4434767)
chr2 (255-320)||(14945848-14945913)
chr2 (255-320)||(33299984-33300049)
[»] chr3 (11 HSPs)
chr3 (255-330)||(36674621-36674696)
chr3 (255-318)||(23004761-23004824)
chr3 (255-297)||(29915094-29915136)
chr3 (255-297)||(29964247-29964289)
chr3 (253-322)||(48034919-48034988)
chr3 (255-322)||(9271115-9271182)
chr3 (255-322)||(38247803-38247870)
chr3 (255-322)||(50989208-50989275)
chr3 (255-322)||(51092340-51092407)
chr3 (255-321)||(33288137-33288203)
chr3 (255-324)||(8330700-8330769)
[»] chr8 (12 HSPs)
chr8 (255-324)||(11904858-11904927)
chr8 (255-324)||(35200561-35200630)
chr8 (253-320)||(31774727-31774794)
chr8 (255-316)||(12142086-12142147)
chr8 (280-324)||(10592006-10592050)
chr8 (253-320)||(41075709-41075776)
chr8 (258-323)||(8368480-8368545)
chr8 (255-324)||(28898000-28898069)
chr8 (253-324)||(45502665-45502736)
chr8 (255-327)||(45413643-45413715)
chr8 (255-321)||(16465723-16465789)
chr8 (255-320)||(2599536-2599601)
[»] chr7 (10 HSPs)
chr7 (255-324)||(28713682-28713751)
chr7 (255-324)||(38349567-38349636)
chr7 (255-327)||(42974483-42974555)
chr7 (271-324)||(37536423-37536476)
chr7 (257-320)||(11752604-11752667)
chr7 (256-327)||(13768379-13768450)
chr7 (256-327)||(47480118-47480188)
chr7 (256-330)||(38754997-38755071)
chr7 (257-321)||(33496506-33496570)
chr7 (256-321)||(31741049-31741114)
[»] chr1 (12 HSPs)
chr1 (256-324)||(29731194-29731262)
chr1 (255-324)||(47571671-47571740)
chr1 (255-323)||(26040975-26041043)
chr1 (255-324)||(39858352-39858421)
chr1 (256-324)||(48489455-48489523)
chr1 (255-324)||(527007-527076)
chr1 (257-324)||(19989246-19989313)
chr1 (255-321)||(1994958-1995024)
chr1 (255-324)||(13276572-13276641)
chr1 (255-324)||(46845764-46845833)
chr1 (255-323)||(6487733-6487801)
chr1 (255-323)||(15225100-15225168)
[»] chr5 (7 HSPs)
chr5 (255-324)||(12248278-12248347)
chr5 (255-324)||(43100316-43100385)
chr5 (271-330)||(33687668-33687727)
chr5 (255-324)||(15285334-15285403)
chr5 (255-322)||(13988252-13988319)
chr5 (255-322)||(36890382-36890449)
chr5 (256-324)||(35906000-35906068)
[»] chr4 (14 HSPs)
chr4 (255-324)||(51579325-51579394)
chr4 (255-320)||(48525331-48525396)
chr4 (255-324)||(5817488-5817557)
chr4 (269-329)||(51579599-51579659)
chr4 (255-322)||(43749097-43749164)
chr4 (255-324)||(24059241-24059310)
chr4 (255-324)||(36851232-36851301)
chr4 (255-322)||(17044008-17044075)
chr4 (255-322)||(25164581-25164648)
chr4 (255-322)||(37605801-37605868)
chr4 (253-320)||(41277218-41277285)
chr4 (255-322)||(55281213-55281280)
chr4 (255-324)||(20107115-20107185)
chr4 (271-324)||(22364569-22364622)
[»] chr6 (5 HSPs)
chr6 (256-324)||(12748217-12748285)
chr6 (256-323)||(29429590-29429657)
chr6 (244-322)||(34792761-34792839)
chr6 (255-317)||(16717995-16718059)
chr6 (255-322)||(14314096-14314163)


Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 238
Target Start/End: Original strand, 40042171 - 40042390
Alignment:
Q  16 atcagttgagcttaactagagatttccttggtgttggtgatgactcattgaagagaaccttgttgcaacaagagatgattcctaggttcaatccaatagg 115  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40042171 atcagctgagcttaactagagatttccttggtgttggtgatgactcattgaagagaaccttgttgcaacaagagatgattcctaggttcaatccaatagg 40042270  T
Q  116 atctgtcacgaacttgcaaagtgagtttggtggacactattgatagtgaagttgtgtacgatagatatattattattactttgttagcagcagcagcaga 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||   ||||||||||||    
T  40042271 atctgtcacgaacttgcaaagtgagtttggtggacactattgatagtgaagttgtgtacaatagatatattattattactttgtt---agcagcagcaga 40042367  T
Q  216 taaatacaaaacattgtgatgac 238  Q
    |||||| ||||||||||||||||    
T  40042368 taaatagaaaacattgtgatgac 40042390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 343 - 395
Target Start/End: Original strand, 40042459 - 40042511
Alignment:
Q  343 aaaaactcacatttatcgtctttcgcacattctcacatgaggtgatacaatgt 395  Q
    ||||||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  40042459 aaaaactcatatttattgtctttcgcacactctcacatgaggtgatacaatgt 40042511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 40216440 - 40216483
Alignment:
Q  281 atataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    ||||||||||||||||| ||||||||||||||||||||||||||    
T  40216440 atataccacttgtacacccacatataattgtgacatgtgtccat 40216483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 271 - 318
Target Start/End: Original strand, 40042390 - 40042437
Alignment:
Q  271 cttatgtggcatataccacttgtacactcacatataattgtgacatgt 318  Q
    ||||||||||||  |||||||||||||||| |||||||||||||||||    
T  40042390 cttatgtggcatgcaccacttgtacactcagatataattgtgacatgt 40042437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 3121615 - 3121684
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || ||||||  |||||| |||||||| |||||||| | | |||||||||||||||||||    
T  3121615 gtgatacatagaccaccttagatggcatgtaccacttatacactcatacacaattgtgacatgtgtccat 3121684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 322
Target Start/End: Complemental strand, 32599434 - 32599358
Alignment:
Q  246 tttagattggtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||| | |||||||||| || |||||| ||||||| |||||||||||||  |||| |||||| ||||| ||||||    
T  32599434 tttagagtagtgatacatagaccaccttaggtggcatgtaccacttgtacatccacacataattttgacaagtgtcc 32599358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 351 - 398
Target Start/End: Complemental strand, 4434672 - 4434625
Alignment:
Q  351 acatttatcgtctttcgcacattctcacatgaggtgatacaatgtgtg 398  Q
    |||||||| |||| || ||||||||||||||||||| |||||||||||    
T  4434672 acatttattgtctctcacacattctcacatgaggtggtacaatgtgtg 4434625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 13697142 - 13697075
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| | |||| ||||| ||||||    
T  13697142 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 13697075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 4434767 - 4434698
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||| ||| || |||||||||||||| ||||||||||||   |||| |  ||||||||||||||||||    
T  4434767 gtgatatatagaccaccttatgtggcatgtaccacttgtacttccacacactattgtgacatgtgtccat 4434698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 320
Target Start/End: Complemental strand, 14945913 - 14945848
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgt 320  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| | || ||| ||||||||    
T  14945913 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaaatgtaacatgtgt 14945848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 33299984 - 33300049
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgt 320  Q
    |||||||||| || |||||| ||||||| ||||| || ||||| || ||| |||||||||||||||    
T  33299984 gtgatacatagaccaccttaagtggcatgtaccatttatacacccatatacaattgtgacatgtgt 33300049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 255 - 330
Target Start/End: Complemental strand, 36674696 - 36674621
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccatatgatc 330  Q
    |||||||||| || |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36674696 gtgatacataaaccaccttaggtgacatataccacttgtacactcacatataattgtgacatgtgtccatgtgatc 36674621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 318
Target Start/End: Original strand, 23004761 - 23004824
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgt 318  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| | |||||||||||||    
T  23004761 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattgtgacatgt 23004824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 29915136 - 29915094
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacac 297  Q
    |||||||||| || |||||||||||||||||||||||||||||    
T  29915136 gtgatacatagaccaccttatgtggcatataccacttgtacac 29915094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 29964289 - 29964247
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacac 297  Q
    |||||||||| || |||||||||||||||||||||||||||||    
T  29964289 gtgatacatagaccaccttatgtggcatataccacttgtacac 29964247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 253 - 322
Target Start/End: Complemental strand, 48034988 - 48034919
Alignment:
Q  253 tggtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||||||| || |||||| ||| ||| |||||||||||||| |||||| |||| ||||| ||||||    
T  48034988 tggtgatacataaaccaccttaggtgacatgtaccacttgtacacccacatacaattttgacaagtgtcc 48034919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 9271115 - 9271182
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||||| || ||||||  |||||| |||||||||||||| |||| |||||| ||||| ||||||    
T  9271115 gtgatacatagaccaccttagatggcatgtaccacttgtacacccacacataattttgacaagtgtcc 9271182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 38247803 - 38247870
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| | |||| ||||| ||||||    
T  38247803 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 38247870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 50989208 - 50989275
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| | |||| ||||| ||||||    
T  50989208 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 50989275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 51092340 - 51092407
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| | |||| ||||| ||||||    
T  51092340 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 51092407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 33288137 - 33288203
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtc 321  Q
    |||||||||| || |||||| |||| || |||||||||||||| |||| | |||||||| |||||||    
T  33288137 gtgatacatagaccaccttaggtggtatgtaccacttgtacacccacacacaattgtgatatgtgtc 33288203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 8330769 - 8330700
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || ||||||  |||||| ||||||||||||| ||||| | |||||||| || |||||||    
T  8330769 gtgatacatagaccaccttagatggcatgtaccacttgtacattcacacacaattgtgatatatgtccat 8330700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 7e-22; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 11904858 - 11904927
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  11904858 gtgatacataaaccaccttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccat 11904927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 35200561 - 35200630
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || |||||| ||||||||||  |||||||||| ||||||||||||||||||||||||||    
T  35200561 gtgatacataaaccaccttaggtggcatatattacttgtacacccacatataattgtgacatgtgtccat 35200630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 31774727 - 31774794
Alignment:
Q  253 tggtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgt 320  Q
    |||||||||||| || |||||| ||| ||| ||||||||||||||||||||| |||||||||||||||    
T  31774727 tggtgatacatagaccaccttaggtgacatgtaccacttgtacactcacatacaattgtgacatgtgt 31774794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 316
Target Start/End: Original strand, 12142086 - 12142147
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacat 316  Q
    |||||||||| || |||||| |||||||||||||||||||||  ||||||||||||||||||    
T  12142086 gtgatacataaaccaccttaggtggcatataccacttgtacatccacatataattgtgacat 12142147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 280 - 324
Target Start/End: Original strand, 10592006 - 10592050
Alignment:
Q  280 catataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||||||||||| ||||||||||||||||||||||||||    
T  10592006 catataccacttgtacacccacatataattgtgacatgtgtccat 10592050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 320
Target Start/End: Complemental strand, 41075776 - 41075709
Alignment:
Q  253 tggtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgt 320  Q
    |||||||||||| || |||||| ||| ||| |||||||||||||| |||||| |||||||||||||||    
T  41075776 tggtgatacatagaccaccttaggtgacatgtaccacttgtacacccacatacaattgtgacatgtgt 41075709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 258 - 323
Target Start/End: Complemental strand, 8368545 - 8368480
Alignment:
Q  258 atacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcca 323  Q
    ||||||| || |||||| ||||||| |||||||||||||| |||| | ||||||||||||||||||    
T  8368545 atacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtgtcca 8368480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 28898000 - 28898069
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || |||||| |||||||||||||||| ||||| || | | |||||||||||||||||||    
T  28898000 gtgatacatagaccaccttaggtggcatataccacttatacacccatacacaattgtgacatgtgtccat 28898069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 324
Target Start/End: Original strand, 45502665 - 45502736
Alignment:
Q  253 tggtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||| ||||||| || |||||| |||| || ||||||||||||| ||| ||| |||||||||||||||||||    
T  45502665 tggttatacataaaccaccttaagtggtatgtaccacttgtacattcatatacaattgtgacatgtgtccat 45502736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 45413715 - 45413643
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccatatg 327  Q
    |||||||||| || |||||| ||||||| |||||||| ||||  || | | ||||||||||||||||||||||    
T  45413715 gtgatacatagaccaccttaggtggcatgtaccacttatacatccatacacaattgtgacatgtgtccatatg 45413643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 321
Target Start/End: Complemental strand, 16465789 - 16465723
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtc 321  Q
    |||||||||| || ||||||   ||||| ||||||||||| || |||||| ||||||||||||||||    
T  16465789 gtgatacatagaccaccttagacggcatgtaccacttgtatacccacatacaattgtgacatgtgtc 16465723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 2599536 - 2599601
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgt 320  Q
    |||||||||| || |||||| ||||||| |||||||| ||||| || | | |||||||||||||||    
T  2599536 gtgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgt 2599601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 7e-22; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 28713682 - 28713751
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  28713682 gtgatacataaaccaccttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccat 28713751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 38349636 - 38349567
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || | |||| |||||||||||||||||||||| ||||||||||||||||||||||||||    
T  38349636 gtgatacataaaccatcttaggtggcatataccacttgtacacccacatataattgtgacatgtgtccat 38349567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 327
Target Start/End: Complemental strand, 42974555 - 42974483
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccatatg 327  Q
    |||||||||| || |||||| ||||||| |||||||| ||||| |||||| ||||||||||||||| ||||||    
T  42974555 gtgatacataaaccaccttaggtggcatgtaccacttatacacccacatacaattgtgacatgtgttcatatg 42974483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 37536476 - 37536423
Alignment:
Q  271 cttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||| |||||||||| ||| ||||||| ||||||||||||||||||||||||||    
T  37536476 cttaggtggcatatatcacatgtacacccacatataattgtgacatgtgtccat 37536423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 257 - 320
Target Start/End: Original strand, 11752604 - 11752667
Alignment:
Q  257 gatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgt 320  Q
    |||||||| || |||||| ||||||| || |||||||||||  |||||||||||||||||||||    
T  11752604 gatacatagaccaccttaggtggcatgtatcacttgtacacctacatataattgtgacatgtgt 11752667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 327
Target Start/End: Original strand, 13768379 - 13768450
Alignment:
Q  256 tgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccatatg 327  Q
    ||||||||| || ||||||  || ||||||||||||| ||||  |||||||||||||| |||||||||||||    
T  13768379 tgatacataaaccaccttagatgacatataccacttgcacacctacatataattgtgatatgtgtccatatg 13768450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 327
Target Start/End: Complemental strand, 47480188 - 47480118
Alignment:
Q  256 tgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccatatg 327  Q
    ||||||||| || |||||| ||||||| ||||| |||||||| || ||| ||||||||||||||||||||||    
T  47480188 tgatacatagaccaccttaggtggcatgtaccatttgtacaccca-atacaattgtgacatgtgtccatatg 47480118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 256 - 330
Target Start/End: Complemental strand, 38755071 - 38754997
Alignment:
Q  256 tgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccatatgatc 330  Q
    ||||||||| || |||||| ||||||| ||||||||| |||| || | |||||| |||||||||||||| |||||    
T  38755071 tgatacatagaccaccttaggtggcatgtaccacttgaacacccatacataattatgacatgtgtccatgtgatc 38754997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 257 - 321
Target Start/End: Original strand, 33496506 - 33496570
Alignment:
Q  257 gatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtc 321  Q
    |||||||| || |||||| ||| ||| |||||||||||||| ||||||||||| ||||| |||||    
T  33496506 gatacatagaccaccttaggtgacatgtaccacttgtacacccacatataattttgacaagtgtc 33496570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 321
Target Start/End: Original strand, 31741049 - 31741114
Alignment:
Q  256 tgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtc 321  Q
    ||||||||| || |||||| ||||||| |||||||| ||||| || | | ||||||||||||||||    
T  31741049 tgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgtc 31741114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 29731194 - 29731262
Alignment:
Q  256 tgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    ||||||||| || |||||| ||||||||||||||| |||||| ||||||||||||||||||||||||||    
T  29731194 tgatacataaaccaccttaggtggcatataccactagtacacccacatataattgtgacatgtgtccat 29731262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 47571740 - 47571671
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||| ||| || |||||| ||| ||||| |||||||||||| ||||||||||||||||||||||||||    
T  47571740 gtgatatataaaccaccttaggtgacatatgccacttgtacacccacatataattgtgacatgtgtccat 47571671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 26040975 - 26041043
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcca 323  Q
    |||||||| | || |||||| ||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  26040975 gtgatacacaaaccaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtcca 26041043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 39858352 - 39858421
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || |||||| |||||||||||||||| ||||| || | | |||||||||||||||||||    
T  39858352 gtgatacatagaccaccttaggtggcatataccacttatacacccatacacaattgtgacatgtgtccat 39858421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 48489455 - 48489523
Alignment:
Q  256 tgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    ||||||||| |  |||||| |||||||||||||||||||||  || ||||||||||||||| |||||||    
T  48489455 tgatacataaatcaccttaggtggcatataccacttgtacatccatatataattgtgacatctgtccat 48489523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 527076 - 527007
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || |||||| ||||||| |||||||| ||||| || | | |||||||||||||||||||    
T  527076 gtgatacatagaccaccttaggtggcatgtaccacttatacacccatacacaattgtgacatgtgtccat 527007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 257 - 324
Target Start/End: Original strand, 19989246 - 19989313
Alignment:
Q  257 gatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||| || ||||||  || |||||||||||||||||  |||||| || ||||||||||||||||    
T  19989246 gatacataaaccaccttagatgacatataccacttgtacatccacatacaagtgtgacatgtgtccat 19989313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 321
Target Start/End: Original strand, 1994958 - 1995024
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtc 321  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| | |||| ||||| |||||    
T  1994958 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtc 1995024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 13276641 - 13276572
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || |||||| |||| || |||||||| |||||||| | | |||| ||||||||||||||    
T  13276641 gtgatacatagaccaccttaggtggtatgtaccacttatacactcatacacaattatgacatgtgtccat 13276572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 46845833 - 46845764
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || ||||||  |||||| |||||||| ||||| || | | |||||||||||||||||||    
T  46845833 gtgatacatagaccaccttagatggcatgtaccacttatacacccatacacaattgtgacatgtgtccat 46845764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 323
Target Start/End: Original strand, 6487733 - 6487801
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcca 323  Q
    |||||||||| || |  ||| ||||||| |||||||||||||  |||| | ||||||||||||||||||    
T  6487733 gtgatacatagaccaatttaggtggcatgtaccacttgtacatccacacacaattgtgacatgtgtcca 6487801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 323
Target Start/End: Complemental strand, 15225168 - 15225100
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcca 323  Q
    |||||||||| || |||||| ||||||| ||| |||| ||||| |||||  ||||||||||| ||||||    
T  15225168 gtgatacatagaccaccttaggtggcatgtacaacttatacacccacatgcaattgtgacatatgtcca 15225100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 4e-17; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 12248278 - 12248347
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| |  |||||| |||||||||||||||||||||  ||||||||||||||||||||||||||    
T  12248278 gtgatacataaatcaccttaggtggcatataccacttgtacatccacatataattgtgacatgtgtccat 12248347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 43100385 - 43100316
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || | |||| |||| ||||||||||||||||| ||||||||||||||||||||||||||    
T  43100385 gtgatacataaaccatcttaggtggtatataccacttgtacacccacatataattgtgacatgtgtccat 43100316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 271 - 330
Target Start/End: Original strand, 33687668 - 33687727
Alignment:
Q  271 cttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccatatgatc 330  Q
    |||| |||||||||||||||||||||  || ||||||||||||||||||||||| |||||    
T  33687668 cttaggtggcatataccacttgtacatccatatataattgtgacatgtgtccatgtgatc 33687727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 15285334 - 15285403
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || ||||||  |||||| |||||||| |||||||| | | |||||||||||||||||||    
T  15285334 gtgatacatagaccaccttagatggcatgtaccacttatacactcatacacaattgtgacatgtgtccat 15285403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 13988252 - 13988319
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| | |||| ||||| ||||||    
T  13988252 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 13988319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 36890382 - 36890449
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| | |||| ||||| ||||||    
T  36890382 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 36890449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 35906000 - 35906068
Alignment:
Q  256 tgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    ||||||||| || |||||| |||| || || ||||| ||||| || ||| |||||||||||||||||||    
T  35906000 tgatacatagaccaccttaggtggtatgtatcacttatacacccatatacaattgtgacatgtgtccat 35906068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 51579325 - 51579394
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||||| |||||||||||||||||||    
T  51579325 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtccat 51579394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 255 - 320
Target Start/End: Original strand, 48525331 - 48525396
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgt 320  Q
    |||||||||| || || ||| |||||||||||||||||||||  ||||||||||||||||||||||    
T  48525331 gtgatacataaaccactttaggtggcatataccacttgtacatccacatataattgtgacatgtgt 48525396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 5817557 - 5817488
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || | |||| ||||||| |||||||||||||| |||| | |||||||||||||||||||    
T  5817557 gtgatacatagaccatcttaggtggcatgtaccacttgtacacccacacacaattgtgacatgtgtccat 5817488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 269 - 329
Target Start/End: Original strand, 51579599 - 51579659
Alignment:
Q  269 accttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccatatgat 329  Q
    |||||| ||||||| |||||||||||||| || ||| ||||||||||||||||||| ||||    
T  51579599 accttaggtggcatgtaccacttgtacacccaaatacaattgtgacatgtgtccatgtgat 51579659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 43749097 - 43749164
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| |||||| ||||| ||||||    
T  43749097 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacataattttgacaagtgtcc 43749164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 24059310 - 24059241
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || ||||||  |||||| || || |||||||| |||||| |||||||||||||||||||    
T  24059310 gtgatacatagaccaccttagatggcatgtatcatttgtacacccacatacaattgtgacatgtgtccat 24059241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 36851232 - 36851301
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    ||||| |||| || |||||| ||||||| |||||||||||||| |||  || ||||||||||||||||||    
T  36851232 gtgatgcatagaccaccttaagtggcatgtaccacttgtacacccacgcatgattgtgacatgtgtccat 36851301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 17044008 - 17044075
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| | |||| ||||| ||||||    
T  17044008 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 17044075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 25164648 - 25164581
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| | |||| ||||| ||||||    
T  25164648 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 25164581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 37605868 - 37605801
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| | |||| ||||| ||||||    
T  37605868 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 37605801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 320
Target Start/End: Original strand, 41277218 - 41277285
Alignment:
Q  253 tggtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgt 320  Q
    |||||||||||| |  |||||| ||| ||| |||||| ||||||| |||||| |||||||||||||||    
T  41277218 tggtgatacatagatcaccttaggtgacatgtaccacctgtacacccacatacaattgtgacatgtgt 41277285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 322
Target Start/End: Original strand, 55281213 - 55281280
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| | |||| ||||| ||||||    
T  55281213 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 55281280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 324
Target Start/End: Original strand, 20107115 - 20107185
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtaca-ctcacatataattgtgacatgtgtccat 324  Q
    |||||||||| || |||||| ||||||| ||||||||||||| | | || | |||||||||||||||||||    
T  20107115 gtgatacatagaccaccttaggtggcatgtaccacttgtacaccccgcacacaattgtgacatgtgtccat 20107185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 324
Target Start/End: Complemental strand, 22364622 - 22364569
Alignment:
Q  271 cttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    |||| |||||||||||||||| ||||| || ||| |||||||| ||||||||||    
T  22364622 cttaggtggcatataccacttatacacccatatacaattgtgatatgtgtccat 22364569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 324
Target Start/End: Original strand, 12748217 - 12748285
Alignment:
Q  256 tgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtccat 324  Q
    ||||||||| || || ||| |||||||||||||||||||||| |||||||||||||||||| |||||||    
T  12748217 tgatacataaaccactttaggtggcatataccacttgtacacccacatataattgtgacatctgtccat 12748285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 256 - 323
Target Start/End: Original strand, 29429590 - 29429657
Alignment:
Q  256 tgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcca 323  Q
    ||||||| | ||||||||| ||||||| |||||||||||||| |||||| ||||||||||||||||||    
T  29429590 tgatacacagactaccttaggtggcatgtaccacttgtacacccacatacaattgtgacatgtgtcca 29429657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 244 - 322
Target Start/End: Complemental strand, 34792839 - 34792761
Alignment:
Q  244 tatttagattggtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||| | |||||||||| || |||||| ||||||| |||||||||||||| ||||||||||| ||||| ||||||    
T  34792839 tatttagagtagtgatacatagaccaccttaggtggcatgtaccacttgtacacccacatataattttgacaagtgtcc 34792761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 317
Target Start/End: Original strand, 16717995 - 16718059
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtaca--ctcacatataattgtgacatg 317  Q
    |||||||||| || |||||| |||||||||||||||||||||  | |||||||||||||||||||    
T  16717995 gtgatacataaaccaccttaggtggcatataccacttgtacacccacacatataattgtgacatg 16718059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 255 - 322
Target Start/End: Complemental strand, 14314163 - 14314096
Alignment:
Q  255 gtgatacatacactaccttatgtggcatataccacttgtacactcacatataattgtgacatgtgtcc 322  Q
    |||||||||| || |||||| ||||||| |||||||||||||| |||| | |||| ||||| ||||||    
T  14314163 gtgatacatagaccaccttaggtggcatgtaccacttgtacacccacacacaattttgacaagtgtcc 14314096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University