View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6747_high_6 (Length: 244)
Name: NF6747_high_6
Description: NF6747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6747_high_6 |
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Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 1329821 - 1330053
Alignment:
| Q |
1 |
gaatgacactgtcgttgctacttctgttatgtcttaggagttggtcgctgccacaatcatctatttgtgcaacttgtctttactctttatgnnnnnnnnn |
100 |
Q |
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| T |
1329821 |
gaatgacactgtcgttgctacttctgttatgtcttaggagttggtcgctgccacaatcatctatttgtgcaacttgtctttactctttatggtttttttg |
1329920 |
T |
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| Q |
101 |
nnnnn----gaaacatcatatttattaaaccaacaacccatacaagacgtaatagttgtggacgagcataaacaatacaagnnnnnnnccaaactccagg |
196 |
Q |
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| T |
1329921 |
ttttgttttgaaacatcataattattaaaccaacaacccatacaagacgtaatagttgtggacgagcataaacaatacaagaaaaaaaccaaactccagg |
1330020 |
T |
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| Q |
197 |
cagcaaaatacacggctatcatggaacaccaaa |
229 |
Q |
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||| ||||||||||||||||||||||||||||| |
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| T |
1330021 |
cagtaaaatacacggctatcatggaacaccaaa |
1330053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 115 - 229
Target Start/End: Original strand, 9850041 - 9850155
Alignment:
| Q |
115 |
tatttattaaaccaacaacccatacaagacgtaatagttgtggacgagcataaacaatacaagnnnnnnnccaaactccaggcagcaaaatacacggcta |
214 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| |||| ||||| |
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| T |
9850041 |
tatttattaaaccaacaacccatacaagacgtaatagttgtggacgagcataaacaatacaagaaaaataccaaactccaggcagaaaagtacatggcta |
9850140 |
T |
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| Q |
215 |
tcatggaacaccaaa |
229 |
Q |
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| T |
9850141 |
tcatggaacaccaaa |
9850155 |
T |
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