View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6747_low_1 (Length: 618)
Name: NF6747_low_1
Description: NF6747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6747_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 595; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 8 - 610
Target Start/End: Complemental strand, 3094365 - 3093763
Alignment:
| Q |
8 |
tggacatcagcaaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgtt |
107 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3094365 |
tggacaccagcaaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgtt |
3094266 |
T |
|
| Q |
108 |
ccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaa |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3094265 |
ccaaagacattgaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaa |
3094166 |
T |
|
| Q |
208 |
tggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttacc |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3094165 |
tggagaaaatgcctttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttacc |
3094066 |
T |
|
| Q |
308 |
aaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttctt |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3094065 |
aaagggttctcatttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttctt |
3093966 |
T |
|
| Q |
408 |
ggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaatctgcatttgtaatat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3093965 |
ggtccaggctctccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaatctgcatttgtaatat |
3093866 |
T |
|
| Q |
508 |
ttgtgagcaaattaaaaataacatcaatatttatacttagaaatatatgaaggcggactatgggatctcacattcgtgacaatgttgacaatctgatgtc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
3093865 |
ttgtgagcaaattaaaaataacatcaatatttatacttagaaatatatgaaggcggactatgggatctcacattcgtgacaatgttgacaatctgatgac |
3093766 |
T |
|
| Q |
608 |
cat |
610 |
Q |
| |
|
||| |
|
|
| T |
3093765 |
cat |
3093763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 19 - 528
Target Start/End: Complemental strand, 3085508 - 3084999
Alignment:
| Q |
19 |
aaccttataatcactatcaacaaccctaccaacttgacaaccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttccaaagacatt |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3085508 |
aaccttataatcattatcaacaaccctaccaacttgacaaccaccatgataatgccatattgtcatcacagtgtctctacaaaattgttccaaagacatt |
3085409 |
T |
|
| Q |
119 |
gaagtatttgtgtgtttaggcaataaatttactggtgaatttgctgtcatgttaagtagcatagaaactgacatgtttgtgtatttaaatggagaaaatg |
218 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||| |||||| |||||||||||| |||||||| ||| ||||| ||||| ||||||||| ||| | |
|
|
| T |
3085408 |
gaagtatttgtgtgcttaggcaataaatttacttgtgcatttgcaatcatgttaagtaacatagaaaatgatatgttattgtatctaaatggagcaaaag |
3085309 |
T |
|
| Q |
219 |
cctttgaatctattattttctcaattgtgttcatgccttgtatgcatctttctaagtctcttgggtcttggaagtagttaaatgttaccaaagggttctc |
318 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| || |
|
|
| T |
3085308 |
catttgaatctattattttctcaattgtgcccatgccttgtatgcatcgttccaagtctcttgggtcctggaagtagttaaatgttaccaaagggttatc |
3085209 |
T |
|
| Q |
319 |
atttggatcggtgtttcggagctccaaatgacccgttgaaattggccccaagattttttctagaatgaatccacccctgaatgcttcttggtccaggctc |
418 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||||||||| || | | ||| || ||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
3085208 |
atttggatcagtgtttcggagctccaaatgacctgttgaaattggacctattactttctccagaatgaatccaccccttaaagcttcttggtctaggctt |
3085109 |
T |
|
| Q |
419 |
tccatcctctctattgcttttgctatggcttctggggtcctttgctttggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagcaaa |
518 |
Q |
| |
|
|| |||||| ||||||||||||||||||||| | | || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3085108 |
tctatcctccctattgcttttgctatggcttgtagaatcatttgctttggtggcaactttgagaattgaccaatctgcatttgtaatatttgtgagtaaa |
3085009 |
T |
|
| Q |
519 |
ttaaaaataa |
528 |
Q |
| |
|
|||||||||| |
|
|
| T |
3085008 |
ttaaaaataa |
3084999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Original strand, 42960045 - 42960094
Alignment:
| Q |
59 |
ccaccatgataatgccatatagtcatcacagtgtctctacaaaattgttc |
108 |
Q |
| |
|
||||||||||| ||||| ||||| |||||||||||||||||||| ||||| |
|
|
| T |
42960045 |
ccaccatgatagtgccaaatagtgatcacagtgtctctacaaaactgttc |
42960094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 37 - 81
Target Start/End: Complemental strand, 404934 - 404890
Alignment:
| Q |
37 |
aacaaccctaccaacttgacaaccaccatgataatgccatatagt |
81 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
404934 |
aacaaccctaccaacaacacatccaccatgataatgccatatagt |
404890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University