View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6747_low_10 (Length: 229)
Name: NF6747_low_10
Description: NF6747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6747_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 86; Significance: 3e-41; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 138 - 223
Target Start/End: Original strand, 12770805 - 12770890
Alignment:
| Q |
138 |
agaaagagccaaacacatggcaccgaattacgctaagagagttaaagcttccattgttgctttgcttgcctttctcaccttgatcc |
223 |
Q |
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| T |
12770805 |
agaaagagccaaacacatggcaccgaattacgctaagagagttaaagcttccattgttgctttgcttgcctttctcaccttgatcc |
12770890 |
T |
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Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 8 - 79
Target Start/End: Original strand, 12770677 - 12770748
Alignment:
| Q |
8 |
ctaatacttaggagaaaaattatccgaagagggtttatatattttaatttagggaaggtaggtatgaaccag |
79 |
Q |
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| T |
12770677 |
ctaatacttaggagaaaaattatccgaagagggtttatatattttaatttagggaaggtgggtatgaaccag |
12770748 |
T |
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