View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6747_low_14 (Length: 205)
Name: NF6747_low_14
Description: NF6747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6747_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 15 - 191
Target Start/End: Complemental strand, 4192894 - 4192720
Alignment:
| Q |
15 |
cagatgcgtcagctctggtaataatctgagaaaatggcataattgaatgtaatttcataagtgtctcggacacacctttgatcagaagtgttagtactac |
114 |
Q |
| |
|
|||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
4192894 |
cagacgcgtcagctctggtaataatttgagaaaatggcataattgaatgtaatttcataagtgtgttggacacacctttgatcagaagtgttagtactac |
4192795 |
T |
|
| Q |
115 |
agagaatatgattcagaaacttattcctcaaatttcaactaaatcattaacagtatagagtcatggaagaaataact |
191 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
4192794 |
agagaatatgattcagaaacttattcctcaaatttcaactaaatcattaacag--tagagtcatggaagaaataact |
4192720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 8457929 - 8457967
Alignment:
| Q |
29 |
ctggtaataatctgagaaaatggcataattgaatgtaat |
67 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
8457929 |
ctggtaataatttgagaaaatgacataattgaatgtaat |
8457967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 67
Target Start/End: Original strand, 2976700 - 2976736
Alignment:
| Q |
31 |
ggtaataatctgagaaaatggcataattgaatgtaat |
67 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
2976700 |
ggtaataatttgagaaaatgacataattgaatgtaat |
2976736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 1502578 - 1502616
Alignment:
| Q |
29 |
ctggtaataatctgagaaaatggcataattgaatgtaat |
67 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
1502578 |
ctggtaataatctaagaaaatgacataattgaatgtaat |
1502616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 32166238 - 32166200
Alignment:
| Q |
29 |
ctggtaataatctgagaaaatggcataattgaatgtaat |
67 |
Q |
| |
|
||||||||||| |||||||||| |||||||||||||||| |
|
|
| T |
32166238 |
ctggtaataatttgagaaaatgacataattgaatgtaat |
32166200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 72
Target Start/End: Original strand, 29230071 - 29230112
Alignment:
| Q |
31 |
ggtaataatctgagaaaatggcataattgaatgtaatttcat |
72 |
Q |
| |
|
||||||||| |||||||||| |||||||||||||||| |||| |
|
|
| T |
29230071 |
ggtaataatttgagaaaatgacataattgaatgtaatatcat |
29230112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University