View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6747_low_2 (Length: 583)
Name: NF6747_low_2
Description: NF6747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6747_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 478; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 23 - 554
Target Start/End: Original strand, 33993426 - 33993955
Alignment:
| Q |
23 |
cgtgaaacacttcagcttaaagactcattagcacttaaatatgcagagttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcat |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993426 |
cgtgaaacacttcagcttaaagactcattagcacttaaatatgcagagttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcat |
33993525 |
T |
|
| Q |
123 |
tcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttata |
222 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993526 |
tcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttata |
33993625 |
T |
|
| Q |
223 |
tagggaagatatttcttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggtcttccaatgaggatcagagcc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993626 |
tagggaagatatttcttcatttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggtcttccaatgaggatcagagcc |
33993725 |
T |
|
| Q |
323 |
atgatggaacaaggcatttaaatgttactttgtttggactattannnnnnnnnnnnnnncttgcttgttcttgacaatgtttgtggaacttttattattg |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
33993726 |
atgatggaacaaggcatttaaatgttactttgtttggactatta--tgtgtgtgtgtgtcttgcttgttcttgacaatgtttgtggaacttttattattg |
33993823 |
T |
|
| Q |
423 |
tgggaaataaatgacgtgaagtgattggcatgtgcttagagaagcaaacttgattcgaataaagctatttgtttggcaaaactgcatcatgaatccttta |
522 |
Q |
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| T |
33993824 |
tgggaaataaatgacgtgaagtgattggcatgtgcttagagaagcaaacttgattcgaataaagctatttgtttggcaaaactgcatcatgaatccttta |
33993923 |
T |
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| Q |
523 |
ttaccatttttcatgccgagttagtcatttat |
554 |
Q |
| |
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||||||||||||||| |||||||||||||||| |
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| T |
33993924 |
ttaccatttttcatgtcgagttagtcatttat |
33993955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 23 - 212
Target Start/End: Original strand, 34000428 - 34000617
Alignment:
| Q |
23 |
cgtgaaacacttcagcttaaagactcattagcacttaaatatgcagagttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcat |
122 |
Q |
| |
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|||||||||||||||||||||||||| |||||| |||| |||||||||||||||||||||||||| ||||| ||||| ||||| || || |||||| ||| |
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| T |
34000428 |
cgtgaaacacttcagcttaaagactcgttagcaattaagtatgcagagttagtgtatgctggaaggtggttcgatcctcttcgtgagtcaatggatgcat |
34000527 |
T |
|
| Q |
123 |
tcatggagaagatctcacagactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtcctt |
212 |
Q |
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||||||| ||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34000528 |
tcatggaaaagatctcagagattacaacaggttcagtgagtttgaaactgtataaaggcagtgcttctgtgacgggtcggaagagtcctt |
34000617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 96; Significance: 9e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 41 - 348
Target Start/End: Complemental strand, 18852524 - 18852217
Alignment:
| Q |
41 |
aaagactcattagcacttaaatatgcagagttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcac |
140 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| | || ||| ||||||| || |
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| T |
18852524 |
aaagattcattagcacttaaatatgcagagttagtgtatgccggaagatggtttgatccacttcgcgaatccatggatgcctttatgcagaagattacag |
18852425 |
T |
|
| Q |
141 |
agactacaacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttc |
240 |
Q |
| |
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|||| ||||||||||| |||| ||||||| | || |||||| || | |||| || ||| ||||||| || | ||| | |||||| ||||||| || || |
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| T |
18852424 |
agaccacaacaggttctgtgactttgaaattatacaaaggttctgttactgtaacaggtaggaagagcccctttagcctgtataggcaagatatctcatc |
18852325 |
T |
|
| Q |
241 |
atttgagagtggggagatatataatcatgctgatgctgttgggtttataaagctttatggtcttccaatgaggatcagagccatgatggaacaaggcatt |
340 |
Q |
| |
|
|||||||| | | || |||||| |||| |||||||||| ||| ||||| |||||| ||||||||||||| | || | || ||| | || ||||||||| |
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| T |
18852324 |
atttgagaatagtgatatatatgatcaagctgatgctgctggttttatccggctttacggtcttccaatgaaggtccgggcaatgcttgagcaaggcatt |
18852225 |
T |
|
| Q |
341 |
taaatgtt |
348 |
Q |
| |
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||| |||| |
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| T |
18852224 |
taagtgtt |
18852217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 2e-32; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 48 - 307
Target Start/End: Complemental strand, 42865628 - 42865369
Alignment:
| Q |
48 |
cattagcacttaaatatgcagagttagtgtatgctggaagatggtttgatccacttcgcgaatcgatggattcattcatggagaagatctcacagactac |
147 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||||| | || ||| ||||||| | ||| || |
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| T |
42865628 |
cattagcccttaaatatgcagagttagtgtatgctggtagatggtttgatccacttcgtgagtcgatggacgcctttatgcagaagattactgcgaccac |
42865529 |
T |
|
| Q |
148 |
aacaggttcagtgagtttgaaactgtataaaggtagtgcttctgtgacgggtcggaagagtccttatagtttatatagggaagatatttcttcatttgag |
247 |
Q |
| |
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||||||||| || | ||||||| |||| |||||| || | |||| | ||| ||||||||||| ||| | |||||| ||||||| || ||||||||| |
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| T |
42865528 |
aacaggttccgttactttgaaattgtacaaaggttctgttactgtagctggtatgaagagtccttttagcctgtataggcaagatatctcatcatttgag |
42865429 |
T |
|
| Q |
248 |
agtggggagatatataatcatgctgatgctgttgggtttataaagctttatggtcttcca |
307 |
Q |
| |
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|| | ||||||||| |||| |||||||||| ||| ||||| |||||| ||||||||| |
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|
| T |
42865428 |
ggtagtgagatatatgatcaagctgatgctgctggttttatccggctttacggtcttcca |
42865369 |
T |
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