View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6747_low_3 (Length: 582)
Name: NF6747_low_3
Description: NF6747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6747_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 529; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 529; E-Value: 0
Query Start/End: Original strand, 1 - 570
Target Start/End: Complemental strand, 45601907 - 45601338
Alignment:
| Q |
1 |
gtgtcaatgctccttgtgaaatttcttggagtataaattctgcttgttgcctgtatcgtgaaagataaccattttcttcatttacatatcttagtccttg |
100 |
Q |
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| T |
45601907 |
gtgtcaatgctccttttgaaatttcttggagtataaattctgcctgttgcctgtatcgtgaaagataaccattttcttcatttacatatcttagtccttg |
45601808 |
T |
|
| Q |
101 |
tgctagaggtaatccatcgtttgcccttccaactatagttagcttaaccattatctatgaattaaaactactcttttttattatctcaaatggaatgatt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45601807 |
tgctagaggtaatccatcgtttgcccttccaactatagttaacttaaccattatctatgaattaaaactactcttttttattatctcaaatggaatgatt |
45601708 |
T |
|
| Q |
201 |
tgttctcctttctaaatttgacttcaattacatatatttatttgtgattgtaaggccttttatagaatatgtcaggggaaggaatgactaatgagagaag |
300 |
Q |
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| T |
45601707 |
tgttctcctttctaaatttgacttcaattacatatatttatttgtgattgtaaggccttttatagaatatgtcaggggaaggaatgactaatgagagaag |
45601608 |
T |
|
| Q |
301 |
gaacttggaaaagaagttattcctagtgtgtgcaaaaggaaccattatgatttatgacaatataaaagacaatagggttgccatttgcaaaagttatgaa |
400 |
Q |
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| T |
45601607 |
gaacttggaaaagaagttattcctagtgtgtgcaaaaggaaccattatgatttatgacaatataaaagacaatagggttgccatttgcaaaagttatgaa |
45601508 |
T |
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| Q |
401 |
ccaaatggtaaaagccagtatcttccatctcaattgtaacctaaaatataccacacccttcaataggagttagtattatttaatgtaatacaaaaatata |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
45601507 |
ccaaatggtaaaagccagtatcttccatctcaattgtaacctaaaatatcccacacccttcaataggagttagtattatttaatgtaatacagaaatata |
45601408 |
T |
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| Q |
501 |
attatattttcaaactaaacnnnnnnngaatttgttttataaaatttaaagttactaaaatctcaacaaa |
570 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45601407 |
attatattttcaaactaaactttttttgaatttgttttataaaatttaaagttactaaaatctcaacaaa |
45601338 |
T |
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