View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6747_low_4 (Length: 556)
Name: NF6747_low_4
Description: NF6747
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6747_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 522; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 1 - 537
Target Start/End: Original strand, 40849446 - 40849983
Alignment:
| Q |
1 |
gagacatgtaaacatcagtaacaatttgagaaaataaaaatggtcgaatgcaaatgcttgtctcgatgtcgaatcatgcattgaaaaccaaacacacatt |
100 |
Q |
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| T |
40849446 |
gagacatgtaaacatcagtaacaatttgagaaaataaaaatgatcgaatgcaaatgcttgtctcgatgtcgaatcatgcattgaaaaccaaacacacatt |
40849545 |
T |
|
| Q |
101 |
tagtttgaagtgtcagtgctatatagatcaatcgtctaatacactaaagaatacatccttcaacacaaaccttgaggaaagcaagaggtccgtggctttt |
200 |
Q |
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| T |
40849546 |
tagtttgaagtgtcagtgctatatagatcaatcgtctaatacactaaagaatacatccttcaacacaaaccttgaggaaagcaagaggtccgtggctttt |
40849645 |
T |
|
| Q |
201 |
cagatctcctgcttcttcactatcaaccaaatatggggtcgtaggagacaccttaaattctttttgacctgaccacgtcatggcatcgacccaccttgaa |
300 |
Q |
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| T |
40849646 |
cagatctcctgcttcttcactatcaaccaaatatggggtcgtaggagacaccttaaattctttttgacctgaccacgtcatggcatcgacccaccttgaa |
40849745 |
T |
|
| Q |
301 |
ttccctgcc-aaatgagaaacacatttataaatctaaccaacatatttgtgtattctattttgacacaagcaattttggtttcaaattaatcaaacttat |
399 |
Q |
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| T |
40849746 |
ttccctgccaaaatgagaaacacatttataaatctaaccaacatatttgtgtattctattttgacacaagcaattttggtttcaaattaatcaaacttat |
40849845 |
T |
|
| Q |
400 |
aattaatgtgcttcagttaaggacaaattatttaagagagccagacttcaaattctgattagatttattgcagaactttacttactttccacccaaacac |
499 |
Q |
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| T |
40849846 |
aattaatgtgcttcagttaaggacaaattatttaagagagccggacttcaaattctgattagatttattgcagaactttacttactttccacccaaacac |
40849945 |
T |
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| Q |
500 |
ttgattgcccggttccccttgggaactggtggactaac |
537 |
Q |
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| T |
40849946 |
ttgattgcccggttccccttgggaactggtggactaac |
40849983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 87 - 327
Target Start/End: Original strand, 40843592 - 40843832
Alignment:
| Q |
87 |
accaaacacacatttagtttgaagtgtcagtgctatatagatcaatcgtctaatacactaaagaatacatccttcaacacaaaccttgaggaaagcaaga |
186 |
Q |
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|||| |||||| |||| ||||||||||| || |||| ||||||||| | || || || | |||||||||||| |||||||||||| |||||||| | | |
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| T |
40843592 |
accagacacacttttaatttgaagtgtctgtactatgtagatcaatagactcttatgctcatgaatacatccttaaacacaaaccttaaggaaagccaaa |
40843691 |
T |
|
| Q |
187 |
ggtccgtggcttttcagatctcctgcttcttcactatcaaccaaatatggggtcgtaggagacaccttaaattctttttgacctgaccacgtcatggcat |
286 |
Q |
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| T |
40843692 |
ggtccatggcttttcagaattcctgcttcttcactatccaccaaaaatgaagttgtaggagactccttaaatgttgtctgacctgaccacttcatggcat |
40843791 |
T |
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| Q |
287 |
cgacccaccttgaattccctgccaaatgagaaacacattta |
327 |
Q |
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| T |
40843792 |
caacccacctcgaattccctaacaaatgagaagcacattta |
40843832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 169 - 337
Target Start/End: Original strand, 40839056 - 40839224
Alignment:
| Q |
169 |
accttgaggaaagcaagaggtccgtggcttttcagatctcctgcttcttcactatcaaccaaatatggggtcgtaggagacaccttaaattctttttgac |
268 |
Q |
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|||||| ||||||| | ||||| |||||||||||| ||||||||||||||||||||||||| | || || ||||||||| ||||| || || | |||| |
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| T |
40839056 |
accttgcggaaagccaatggtccatggcttttcagaattcctgcttcttcactatcaaccaaaaacggagttgtaggagactccttatatgctgtctgac |
40839155 |
T |
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| Q |
269 |
ctgaccacgtcatggcatcgacccaccttgaattccctgccaaatgagaaacacatttataaatctaac |
337 |
Q |
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| T |
40839156 |
ctgaccacttcatggcatcaatccaccttgaattccctaccaaatgagaagcacatttagaattctaac |
40839224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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