View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6750_high_3 (Length: 414)
Name: NF6750_high_3
Description: NF6750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6750_high_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 15 - 413
Target Start/End: Complemental strand, 33482735 - 33482338
Alignment:
| Q |
15 |
tcagtaacaaggatcaaatcttaaataagtacatgtactactaactaatcaatgaaccaatctatccaattacaaaataaatgaaatatacctgtgcaaa |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
33482735 |
tcagtaacaacgatcaaatcttaaataagtacatgtactactaactaatcaatgaaccaatctatccatttacaaaataaatgaaatatacctgtgcaaa |
33482636 |
T |
|
| Q |
115 |
attccatgaccatggcagaaagcaacacccttgcaaagttgatacatcaaaccctaaaatcaaatccacaaaatcattaattaattgcnnnnnnnnctaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33482635 |
attccatgaccatggcagaaagcaacacccttgcaaagttgatacatcaaaccctaaaatcaaatccacaaaatcattaattaattgcaaaaaaaactaa |
33482536 |
T |
|
| Q |
215 |
caacaaaaatcaaataatttgtagatctgaaaggatattaacatactttgatggttggggatggaatattttgcccagtttgacgaaaactccgaatgaa |
314 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| ||| | |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33482535 |
caacaataatcaaataatttgtagatctgaaagaata-tgttatactttgatggttgggggtggaatattttgcccagtttgacgaaaactccgaatgaa |
33482437 |
T |
|
| Q |
315 |
tttcttaagatcagtatccatatactcaaaaactaaatacaacacagttttcccttctttgttctgcccttgtttcacatccaacaacctaacaccaaa |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33482436 |
tttcttaagatcagtatccatatactcaaaaactaaatacaacacagttttcccttctttgttctgcccttgtttcacatccaacaacctaacaccaaa |
33482338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 9776572 - 9776649
Alignment:
| Q |
291 |
agtttgacgaaaactccgaatgaatttcttaagatcagtatccatatactcaaaaactaaatacaacacagttttccc |
368 |
Q |
| |
|
|||||||| |||||| | |||||| |||||||||| |||||||||||||||||| | |||||||||||||||||||| |
|
|
| T |
9776572 |
agtttgacaaaaacttctaatgaacttcttaagataagtatccatatactcaaatatcaaatacaacacagttttccc |
9776649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 311 - 408
Target Start/End: Original strand, 27060093 - 27060193
Alignment:
| Q |
311 |
tgaatttcttaagatcagtatccatatactcaaaaactaaatacaacacagttttcccttctttgttctgccct---tgtttcacatccaacaacctaac |
407 |
Q |
| |
|
||||||||||||||| |||||||||||||||||| |||||||||| ||||||||||| || |||| ||| |||| |||||||||| ||||||| |
|
|
| T |
27060093 |
tgaatttcttaagataagtatccatatactcaaatcacaaatacaacattgttttcccttcattattcttaccttaatgttgcacatccaactacctaac |
27060192 |
T |
|
| Q |
408 |
a |
408 |
Q |
| |
|
| |
|
|
| T |
27060193 |
a |
27060193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 102 - 177
Target Start/End: Complemental strand, 13445403 - 13445328
Alignment:
| Q |
102 |
atacctgtgcaaaattccatgaccatggcagaaagcaacacccttgcaaagttgatacatcaaaccctaaaatcaa |
177 |
Q |
| |
|
|||||||||||| |||||||| | ||| ||||||||| |||| |||||||||| |||||||| | ||| |||||| |
|
|
| T |
13445403 |
atacctgtgcaagattccatggctatgtcagaaagcagcaccattgcaaagttagtacatcaagctctagaatcaa |
13445328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University