View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6750_high_4 (Length: 361)
Name: NF6750_high_4
Description: NF6750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6750_high_4 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 290; Significance: 1e-163; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 19 - 361
Target Start/End: Original strand, 47726541 - 47726883
Alignment:
| Q |
19 |
caggtccatcatgcaccaatggttgttctccttccttgtatacccataccttgaatctcttcaccatctccttgtggctcctggtttaggggaaaacata |
118 |
Q |
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| T |
47726541 |
caggtccatcatgcaccaatggttgctctccttccttgtatacccataccttgaatctcttcaccatctccttgtggctcctggtttaggggaaaacata |
47726640 |
T |
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| Q |
119 |
ttattgtacaagtataaccaaactggtttagcggaaaagcatagatttgaaattgttataattaaacttaactggtgaaaagcatgtggattcaagtaaa |
218 |
Q |
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| T |
47726641 |
ttattgtacaagtataaccaaactggtttagctgaaaagcatagatttgaaattgttataattaaacttaactggtgaaaagcatgtggattcaagtaaa |
47726740 |
T |
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| Q |
219 |
tggacccttttggaacaaaacnnnnnnncatggtggttgtggacttcttgaaccgaattgctctctgaatcaatgctcttgtttgtgctaattcttcttc |
318 |
Q |
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| T |
47726741 |
tggacccttttggaacaaaactctgtttcatgttggttgtggacttcttggaccgaattgctctctgaatcaatgctcttgtttgtgctaaatcttcttc |
47726840 |
T |
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| Q |
319 |
aatcctctccaaactggtcatgttctttctcccaacaccaaac |
361 |
Q |
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| T |
47726841 |
aatcttctccaaactagtcatgttctttctcccatcaccaaac |
47726883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 47729120 - 47729200
Alignment:
| Q |
21 |
ggtccatcatgcaccaatggttgttctccttccttgtatacccataccttgaatctcttcaccatctccttgtggctcctg |
101 |
Q |
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| T |
47729120 |
ggtccatcatgtactattggttgctctccttcttggtatacccaaatcttcaatctcttcaccatttccatgtggctcctg |
47729200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 182 - 238
Target Start/End: Original strand, 47729513 - 47729569
Alignment:
| Q |
182 |
aaacttaactggtgaaaagcatgtggattcaagtaaatggacccttttggaacaaaa |
238 |
Q |
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| T |
47729513 |
aaacttaactgatgaaaagcatatggatttctgtaaatggaccctcttgggacaaaa |
47729569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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