View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6750_high_5 (Length: 354)

Name: NF6750_high_5
Description: NF6750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6750_high_5
NF6750_high_5
[»] chr3 (7 HSPs)
chr3 (148-349)||(26490831-26491034)
chr3 (3-82)||(11152182-11152261)
chr3 (25-102)||(20251497-20251574)
chr3 (25-102)||(13760167-13760244)
chr3 (2-82)||(8859662-8859742)
chr3 (28-92)||(9129588-9129652)
chr3 (28-92)||(9137695-9137759)
[»] chr5 (2 HSPs)
chr5 (1-102)||(17758906-17759007)
chr5 (2-82)||(8274708-8274788)
[»] chr2 (3 HSPs)
chr2 (23-102)||(5595106-5595185)
chr2 (2-102)||(37120458-37120558)
chr2 (25-102)||(10880016-10880093)
[»] chr7 (1 HSPs)
chr7 (2-102)||(8790643-8790743)
[»] chr1 (2 HSPs)
chr1 (2-102)||(19315069-19315169)
chr1 (2-101)||(45638066-45638165)
[»] chr6 (1 HSPs)
chr6 (25-101)||(30449487-30449563)
[»] scaffold0093 (1 HSPs)
scaffold0093 (5-102)||(16317-16414)
[»] chr8 (5 HSPs)
chr8 (57-102)||(22255227-22255272)
chr8 (2-102)||(26131857-26131957)
chr8 (35-82)||(41344246-41344293)
chr8 (60-102)||(43218076-43218118)
chr8 (2-102)||(41417789-41417890)
[»] chr4 (1 HSPs)
chr4 (26-102)||(11790755-11790831)


Alignment Details
Target: chr3 (Bit Score: 145; Significance: 3e-76; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 148 - 349
Target Start/End: Original strand, 26490831 - 26491034
Alignment:
Q  148 gaaggaaactaaatcctcaggaacaaagttccggtggcatcatttcgaaggag--gtcgaagatcatcaggaggtgacgagtgaagccggaagttagcat 245  Q
    |||| ||||||| |||||||||||||||||||||| |||||||||||||||||  |||||||||||||||| ||||||||||||||| ||||||||||||    
T  26490831 gaagaaaactaagtcctcaggaacaaagttccggtagcatcatttcgaaggagaggtcgaagatcatcaggtggtgacgagtgaagcaggaagttagcat 26490930  T
Q  246 cagatgttgcccctaacttggcaaaatagtttgcacaatggttaccttcacgaagagtatgtcttagcgaaacattcatctgagagagcttgtctttgat 345  Q
    | |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||| | ||||||||||||||||||||| ||||| ||||||||    
T  26490931 cggatgttgcccctaacttggcaaaatagtctgcacaatggttatcttcacgaagagtatgacgtagcgaaacattcatctgagaaagcttatctttgat 26491030  T
Q  346 gtcc 349  Q
    ||||    
T  26491031 gtcc 26491034  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 11152182 - 11152261
Alignment:
Q  3 aggtacataataataaatcttaggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtc 82  Q
    |||||||||| |||||||  | |||||||||||||| ||||||||||| ||||  | ||||||||||||||| |||||||    
T  11152182 aggtacataagaataaatagtgggactagctgataatgtggcaaccccagctagcgtgtgagctacctcattggcttgtc 11152261  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 20251574 - 20251497
Alignment:
Q  25 ggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaactcgacctta 102  Q
    |||||||| | ||| ||||||||||| || | || | |||||||||| ||||||||||||||| | ||||||||||||    
T  20251574 ggactagcggttaatgtggcaaccccggcaagggtgcgagctacctcctttgcttgtcgcctattgaactcgacctta 20251497  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 13760167 - 13760244
Alignment:
Q  25 ggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaactcgacctta 102  Q
    ||||||||| |||| | |||| |||| || | | ||||||||||||||||||||||||||  | ||||||| ||||||    
T  13760167 ggactagctaataatggggcagccccggcaaggacgtgagctacctcatttgcttgtcgcagagtaaactcaacctta 13760244  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 8859742 - 8859662
Alignment:
Q  2 gaggtacataataataaatcttaggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtc 82  Q
    ||||||||||| |||||||  | |||||||||| ||| |||||| ||||  |||  | ||||||||||||||| |||||||    
T  8859742 gaggtacataagaataaatagtgggactagctgctaatgtggcagccccaactagcgtgtgagctacctcattcgcttgtc 8859662  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 9129588 - 9129652
Alignment:
Q  28 ctagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaa 92  Q
    |||||| |||| ||||||||||| ||||| | || | |||||||||||| |||||||||| ||||    
T  9129588 ctagctaataatgtggcaacccctgctaaagtgtaaactacctcatttgtttgtcgcctattaaa 9129652  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 92
Target Start/End: Original strand, 9137695 - 9137759
Alignment:
Q  28 ctagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaa 92  Q
    |||||| |||| ||||||||||| ||||| | || | |||||||||||| |||||||||| ||||    
T  9137695 ctagctaataatgtggcaacccctgctaaagtgtaaactacctcatttgtttgtcgcctattaaa 9137759  T

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Target: chr5 (Bit Score: 74; Significance: 7e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 17759007 - 17758906
Alignment:
Q  1 tgaggtacataataataaatcttaggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaactcgacct 100  Q
    |||||||||| ||||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||    
T  17759007 tgaggtacatgataataaattttacgactagctgataatgtggcaacccccgctaaggtgtgagctatctcatttgcttgtcgcctactaaactcgatct 17758908  T
Q  101 ta 102  Q
    ||    
T  17758907 ta 17758906  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 2 - 82
Target Start/End: Complemental strand, 8274788 - 8274708
Alignment:
Q  2 gaggtacataataataaatcttaggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtc 82  Q
    ||||||||||| ||||| |  | | ||||||| |||| ||||||||||||||||| | ||||||||||||||| |||||||    
T  8274788 gaggtacataagaataagtagtggaactagctaataatgtggcaacccccgctaacgtgtgagctacctcattcgcttgtc 8274708  T

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Target: chr2 (Bit Score: 56; Significance: 4e-23; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 23 - 102
Target Start/End: Original strand, 5595106 - 5595185
Alignment:
Q  23 taggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaactcgacctta 102  Q
    |||| ||||||||||| |||||| | |||||||| | |||||||||||||||||||||||||||||||||||||||||||    
T  5595106 tagggctagctgataatgtggcagctcccgctaaagtgtgagctacctcatttgcttgtcgcctactaaactcgacctta 5595185  T

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Target: chr2; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 37120458 - 37120558
Alignment:
Q  2 gaggtacataataataaatcttaggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaactcgacctt 101  Q
    ||||||||| ||||||||| || ||||||| |||||| |||||||||||  |  ||| ||||||||||||||||||||||| |||  |||||||||||||    
T  37120458 gaggtacatgataataaatattgggactagatgataatgtggcaaccccaacataggtgtgagctacctcatttgcttgtctcctgttaaactcgacctt 37120557  T
Q  102 a 102  Q
    |    
T  37120558 a 37120558  T

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Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 10880093 - 10880016
Alignment:
Q  25 ggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaactcgacctta 102  Q
    ||||||||||| || ||||||||||||||||| | || |||||| ||||||| ||||||||| |||||||||||||||    
T  10880093 ggactagctgacaatgtggcaacccccgctaaagtgtaagctacttcatttgtttgtcgcctgctaaactcgacctta 10880016  T

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Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 8790743 - 8790643
Alignment:
Q  2 gaggtacataataataaatcttaggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaactcgacctt 101  Q
    |||||| || ||||||||| || |||||||||||||| ||||||||| | || | || ||||||||||||||||||||||| |||  |||||||||||||    
T  8790743 gaggtatatgataataaatattgggactagctgataatgtggcaacctcagcaagggtgtgagctacctcatttgcttgtctcctgttaaactcgacctt 8790644  T
Q  102 a 102  Q
    |    
T  8790643 a 8790643  T

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Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 19315169 - 19315069
Alignment:
Q  2 gaggtacataataataaatcttaggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaactcgacctt 101  Q
    ||||||||  ||||||||| || | ||||| |||||| ||||||||  | ||||||| |||||||| || | ||||||||||||||||||||||||||||    
T  19315169 gaggtacacgataataaatattggaactagatgataatgtggcaacttctgctaaggtgtgagctatcttaattgcttgtcgcctactaaactcgacctt 19315070  T
Q  102 a 102  Q
    |    
T  19315069 a 19315069  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 2 - 101
Target Start/End: Complemental strand, 45638165 - 45638066
Alignment:
Q  2 gaggtacataataataaatcttaggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaactcgacctt 101  Q
    ||||||||||| ||||| |  | ||||||||| ||||  |||||||||| ||||  | ||||||||||||||| ||||||| || | ||||||| |||||    
T  45638165 gaggtacataagaataagtaatgggactagctaataatatggcaaccccagctatcgtgtgagctacctcattcgcttgtctccgattaaactcaacctt 45638066  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 30449487 - 30449563
Alignment:
Q  25 ggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaactcgacctt 101  Q
    ||||||| |||||| ||||||||||| ||||| | |||||||||||||||||||||| || || ||||||| |||||    
T  30449487 ggactagttgataatgtggcaacccctgctaaagtgtgagctacctcatttgcttgttgcatattaaactcaacctt 30449563  T

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Target: scaffold0093 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0093
Description:

Target: scaffold0093; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 5 - 102
Target Start/End: Original strand, 16317 - 16414
Alignment:
Q  5 gtacataataataaatcttaggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaactcgacctta 102  Q
    |||||| ||||||||| || ||||||| |||||| |||||||||||  | | || ||| ||||||| ||||||||||| | |  ||||||||||||||    
T  16317 gtacatgataataaatattgggactagttgataatgtggcaaccccaacaagggtgtgtgctacctgatttgcttgtctcttcttaaactcgacctta 16414  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 57 - 102
Target Start/End: Original strand, 22255227 - 22255272
Alignment:
Q  57 ggcgtgagctacctcatttgcttgtcgcctactaaactcgacctta 102  Q
    ||||||||||||||||||||||||||||| | ||||||| ||||||    
T  22255227 ggcgtgagctacctcatttgcttgtcgccgattaaactcaacctta 22255272  T

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Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 26131957 - 26131857
Alignment:
Q  2 gaggtacataataataaatcttaggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaactcgacctt 101  Q
    ||||||||  |||||||||  | |||||||| | ||| | ||||||||| || | || |||||||||||||||| ||||||||||  | |||||||||||    
T  26131957 gaggtacacgataataaatagtgggactagcggttaatgcggcaaccccagcaagggtgtgagctacctcatttccttgtcgcctgttgaactcgacctt 26131858  T
Q  102 a 102  Q
    |    
T  26131857 a 26131857  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 82
Target Start/End: Complemental strand, 41344293 - 41344246
Alignment:
Q  35 ataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtc 82  Q
    |||| ||||||||||||||||| | ||||||||||||||| |||||||    
T  41344293 ataatgtggcaacccccgctaacgtgtgagctacctcattcgcttgtc 41344246  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 102
Target Start/End: Original strand, 43218076 - 43218118
Alignment:
Q  60 gtgagctacctcatttgcttgtcgcctactaaactcgacctta 102  Q
    |||||||||||||||||||||||||||  | ||||||||||||    
T  43218076 gtgagctacctcatttgcttgtcgcctgttgaactcgacctta 43218118  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 2 - 102
Target Start/End: Original strand, 41417789 - 41417890
Alignment:
Q  2 gaggtacataataataaatcttaggactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctact-aaactcgacct 100  Q
    |||||| || ||||||||| |  |||||||||||||| |||  |||||| || |  | ||||||||||||||||||||||| |||  | |||||||||||    
T  41417789 gaggtaaatgataataaatatagggactagctgataatgtgataaccccagcaagagtgtgagctacctcatttgcttgtctcctgttaaaactcgacct 41417888  T
Q  101 ta 102  Q
    ||    
T  41417889 ta 41417890  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 26 - 102
Target Start/End: Complemental strand, 11790831 - 11790755
Alignment:
Q  26 gactagctgataacgtggcaacccccgctaaggcgtgagctacctcatttgcttgtcgcctactaaactcgacctta 102  Q
    ||||||||||||| ||||||||||||| || |  |||||||| ||||||| ||||||| | | | ||||||||||||    
T  11790831 gactagctgataatgtggcaacccccgttaggttgtgagctaactcattttcttgtcgtcaattgaactcgacctta 11790755  T

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