View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6750_high_9 (Length: 241)
Name: NF6750_high_9
Description: NF6750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6750_high_9 |
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| [»] scaffold0294 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 217
Target Start/End: Complemental strand, 5380671 - 5380596
Alignment:
| Q |
142 |
ttgaaaattacctggagtttataactacaaagccagcaaaggcagcagcaccacgaagagcctctcttcatctcag |
217 |
Q |
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| T |
5380671 |
ttgaaaattacctggagtttagaactacaaatccagcaaaggcagcagccccatgaagagcctctctccatttcag |
5380596 |
T |
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Target: scaffold0294 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 177
Target Start/End: Original strand, 11720 - 11778
Alignment:
| Q |
119 |
attttgatgtcatcacttaacatttgaaaattacctggagtttataactacaaagccag |
177 |
Q |
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| T |
11720 |
attttcatgtcatcacttaacatttgaaaattacctggagtttagaactacaaagccag |
11778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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