View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6750_low_13 (Length: 223)
Name: NF6750_low_13
Description: NF6750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6750_low_13 |
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| [»] scaffold2079 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 7e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 7e-79
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 6326355 - 6326164
Alignment:
| Q |
1 |
aagaatgtgttgtactcatcaaaagagtttaacgaacaatggctgaattagaagctacaattccaaatgcaacttcaacttca------tcagattcaac |
94 |
Q |
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| T |
6326355 |
aagaatgtgttgtactcatcaaaagagtttaacgaacaatggctgaattagaagctacaattgcaaatgcaacttcaacttcaacttcatcagcttcaac |
6326256 |
T |
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| Q |
95 |
aaggtaaataacttcaattatcaatcactactcaaacattaacttactctgtttccccttt-ttttagtagaaccctgtttttccattcaag |
185 |
Q |
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| T |
6326255 |
aaggtaaataacttcaattttcaatcactactcaaacattaacttactctgtttccccttttttttagtagaaccctgtttttccattcaag |
6326164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 6333838 - 6333644
Alignment:
| Q |
1 |
aagaatgtgttgtactcatcaaaag---agtttaacgaacaatggctgaattagaagctacaatt------ccaaatgcaacttcaacttcatcagattc |
91 |
Q |
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| T |
6333838 |
aagaatgtgttgtactcatcaaaagtttagtttgaagaacaatggctgaattaggagctacaattacaattccaaatgcaacttcaacttcatcagcttc |
6333739 |
T |
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| Q |
92 |
aacaaggtaaataacttcaattatc-----aatcactactcaaacattaacttactctgtttcccct-ttttttagtagaaccctgtttttccat |
180 |
Q |
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| T |
6333738 |
aacaaggtaaataacttcaattttcagctgagtaactactaaaacattaaccttctctgtttcccttgatttttagtagaactctgtttttccat |
6333644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 6242440 - 6242582
Alignment:
| Q |
1 |
aagaatgtgttgtactcatcaaaag---agtttaacgaacaatggctgaattagaagctacaattccaaatgcaacttcaactt------catcagattc |
91 |
Q |
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| T |
6242440 |
aagaatgtgttgtacttatcaaaagttaagtttgaagaacaacggcagaattaggagctacaattccaaatgcaacttgaacttgaacttcatcggattc |
6242539 |
T |
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| Q |
92 |
aacaaggtaaataacttcaattatcaatcactactcaaacatt |
134 |
Q |
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| T |
6242540 |
aataaggtaaataacttcaattttcaatcactactcaaacatt |
6242582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold2079 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: scaffold2079
Description:
Target: scaffold2079; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 656 - 810
Alignment:
| Q |
1 |
aagaatgtgttgtactcatca---aaag---agtttaacgaacaatggctgaattagaagctacaattccaaatgcaacttcaacttcatcagattcaac |
94 |
Q |
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||||||||||||||||||||| |||| ||||| | |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
656 |
aagaatgtgttgtactcatcatcaaaagttgagtttgaagaacaatggcagaattaggagctacaattccaaatgcaacttcaacttcatcagattcaac |
755 |
T |
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| Q |
95 |
aaggtaaataacttcaattatcaatcactactcaaacattaacttactctgtttc |
149 |
Q |
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| T |
756 |
aaggtaaataacttcaattttcaatcactactcaaacattaacttactctgtttc |
810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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