View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6750_low_3 (Length: 423)

Name: NF6750_low_3
Description: NF6750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6750_low_3
NF6750_low_3
[»] chr8 (6 HSPs)
chr8 (185-417)||(4141541-4141772)
chr8 (44-191)||(4141364-4141515)
chr8 (89-238)||(4129442-4129586)
chr8 (74-238)||(4119374-4119536)
chr8 (10-44)||(4138153-4138187)
chr8 (270-312)||(9779683-9779725)
[»] chr2 (4 HSPs)
chr2 (270-417)||(19546452-19546598)
chr2 (253-305)||(15954504-15954556)
chr2 (325-417)||(32973615-32973707)
chr2 (331-397)||(17793377-17793443)
[»] chr4 (3 HSPs)
chr4 (254-417)||(29236641-29236807)
chr4 (253-312)||(3516687-3516746)
chr4 (254-300)||(29236923-29236969)
[»] chr1 (5 HSPs)
chr1 (253-312)||(41151428-41151487)
chr1 (339-417)||(13791191-13791269)
chr1 (254-312)||(38703106-38703164)
chr1 (325-417)||(39329001-39329093)
chr1 (354-417)||(41151321-41151385)
[»] scaffold0051 (1 HSPs)
scaffold0051 (253-312)||(19672-19731)
[»] chr6 (3 HSPs)
chr6 (331-401)||(6120005-6120075)
chr6 (253-312)||(22607113-22607172)
chr6 (255-312)||(9860300-9860357)
[»] chr3 (1 HSPs)
chr3 (254-312)||(19116860-19116918)
[»] chr7 (1 HSPs)
chr7 (254-311)||(26554214-26554271)


Alignment Details
Target: chr8 (Bit Score: 137; Significance: 2e-71; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 185 - 417
Target Start/End: Original strand, 4141541 - 4141772
Alignment:
Q  185 gaaacaaatttctttattattgataaaactgagtaaactatgatcaaataatagnnnnnnnnnaaggaccgtctccgacaattctgaggcaccgttgtaa 284  Q
    ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||         | |||||||||| ||||||||||||||||||||| ||    
T  4141541 gaaacaaatttatttattattgacaaaactgagtaaactatgatcaaataatagttttttttca-ggaccgtctctgacaattctgaggcaccgttgcaa 4141639  T
Q  285 tcttgacagttttaatttaaaaagtattcnnnnnnnttttaacatcacttagaatgacaaacatctatattctacttaaatatacaagcaattgtttaaa 384  Q
    |||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  4141640 tcttgacagttttaatttaaaaagtattcaaaaaaaatttaacatcacttagaatgacaaacatctatgttctacttaaatataaaagcaattgtttaaa 4141739  T
Q  385 catgacttttgcccacagacaaattgacattta 417  Q
    ||||||||||  ||| |||||||||||||||||    
T  4141740 catgacttttatccatagacaaattgacattta 4141772  T

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Target: chr8; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 44 - 191
Target Start/End: Original strand, 4141364 - 4141515
Alignment:
Q  44 tttttcagtattccagttaaattcactagt---acatagataaacgatagatgtattatgtttattatgcatcaaattgagaacatttcagcagcacagc 140  Q
    ||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  4141364 tttttcagtattccagttaaattcactagtagtacatagataaacgatagatgtattatgtttattatgcatcaaattgagaacatttcagcagcacaac 4141463  T
Q  141 aatcaaggcagtacaagaagttctctt-cccaaattaataaataggaaacaa 191  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4141464 aatcaaggcagtacaagaagttctcttccccaaattaataaataggaaacaa 4141515  T

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Target: chr8; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 89 - 238
Target Start/End: Original strand, 4129442 - 4129586
Alignment:
Q  89 agatgtattatgtttattatgcatcaaattgagaacatttcagcagc-acagcaatcaaggcagtacaagaagttctcttcccaaattaataaataggaa 187  Q
    |||||||||| ||||||||   || | |||||||||| ||  ||||| ||| |||||| |||| ||||||||   |||||||||||||||||||||||||    
T  4129442 agatgtattaggtttattagttattagattgagaacaatttcgcagccacaacaatcagggcaatacaagaa---ctcttcccaaattaataaataggaa 4129538  T
Q  188 acaaatttctttattattgataaaactgagtaaactatgatcaaataatag 238  Q
    |||||||| |   ||||||| ||||||||||||||||||||||||||||||    
T  4129539 acaaatttgt---ttattgacaaaactgagtaaactatgatcaaataatag 4129586  T

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Target: chr8; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 74 - 238
Target Start/End: Original strand, 4119374 - 4119536
Alignment:
Q  74 acatagataaacgatagatgtattatgtttattatgcatcaaattgagaacatttcagcagc-acagcaatcaaggcagtacaagaagttctcttcccaa 172  Q
    |||||||||||| |||||||||||||||||||||   || || ||||  ||| || |||||| ||| |||||| ||||   ||||||||| |||||||||    
T  4119374 acatagataaactatagatgtattatgtttattagttattaagttgattacaatttagcagccacaacaatcagggcaaaccaagaagttttcttcccaa 4119473  T
Q  173 attaataaataggaaacaaatttctttattattgataaaactgagtaaactatgatcaaataatag 238  Q
    |||| ||||||| ||| |||||| ||||||   || |||||| |||||||||||||||||||||||    
T  4119474 attagtaaatagaaaataaatttgtttatt---gacaaaactaagtaaactatgatcaaataatag 4119536  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 10 - 44
Target Start/End: Original strand, 4138153 - 4138187
Alignment:
Q  10 tgaactaataacgtagttgcaaaattaagtcatat 44  Q
    |||||||||||||||||||||||||||||||||||    
T  4138153 tgaactaataacgtagttgcaaaattaagtcatat 4138187  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 270 - 312
Target Start/End: Original strand, 9779683 - 9779725
Alignment:
Q  270 gaggcaccgttgtaatcttgacagttttaatttaaaaagtatt 312  Q
    ||||| ||||||||||||||||| ||| |||||||||||||||    
T  9779683 gaggctccgttgtaatcttgacaatttcaatttaaaaagtatt 9779725  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 270 - 417
Target Start/End: Original strand, 19546452 - 19546598
Alignment:
Q  270 gaggcaccgttgtaatcttgacagttttaatttaaaaagtattcnnnnnnnttttaacatcacttagaatgacaaacatctatattctacttaaatatac 369  Q
    ||||| || |||| ||||||||| |||||||||||||||||||        ||| |||| || ||||| ||||||| ||||| |||||| ||||||||||    
T  19546452 gaggctccattgttatcttgacaattttaatttaaaaagtatt-gaaaaaatttcaacaccagttagagtgacaaatatctacattctagttaaatatac 19546550  T
Q  370 aagcaattgtttaaacatgacttttgcccacagacaaattgacattta 417  Q
     |||||| ||||||||||||||||| || ||||||||||  |||||||    
T  19546551 gagcaatggtttaaacatgacttttaccaacagacaaatatacattta 19546598  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 305
Target Start/End: Complemental strand, 15954556 - 15954504
Alignment:
Q  253 ccgtctccgacaattctgaggcaccgttgtaatcttgacagttttaatttaaa 305  Q
    |||||||||||||||| ||||| ||||||||||||||||| ||||||||||||    
T  15954556 ccgtctccgacaattcggaggccccgttgtaatcttgacaattttaatttaaa 15954504  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 325 - 417
Target Start/End: Complemental strand, 32973707 - 32973615
Alignment:
Q  325 aacatcacttagaatgacaaacatctatattctacttaaatatacaagcaattgtttaaacatgacttttgcccacagacaaattgacattta 417  Q
    |||| |||||||| |||||||||||||| ||||| ||||||||| ||||||| ||| |||||  |||||| |||| || ||||| ||||||||    
T  32973707 aacaccacttagagtgacaaacatctatgttctagttaaatatataagcaatggttcaaacaaaacttttacccataggcaaatagacattta 32973615  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 331 - 397
Target Start/End: Complemental strand, 17793443 - 17793377
Alignment:
Q  331 acttagaatgacaaacatctatattctacttaaatatacaagcaattgtttaaacatgacttttgcc 397  Q
    ||||||| |||||||||| || |||||| |||||||||| |||||| ||| ||||||||||| ||||    
T  17793443 acttagagtgacaaacatttacattctagttaaatatacgagcaatagttcaaacatgacttatgcc 17793377  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 254 - 417
Target Start/End: Complemental strand, 29236807 - 29236641
Alignment:
Q  254 cgtctccgacaattctgaggcaccgttgtaatcttgacagttttaatttaaaaagtattcnnnnnnnt---tttaacatcacttagaatgacaaacatct 350  Q
    ||||||| ||||||| |||||  |||||||||||||||| |||||||||||||||||||        |   ||  ||| |||||| ||||||||||||||    
T  29236807 cgtctccaacaattcagaggccacgttgtaatcttgacaattttaatttaaaaagtattgcaagaaataaattcgacaccacttaaaatgacaaacatct 29236708  T
Q  351 atattctacttaaatatacaagcaattgtttaaacatgacttttgcccacagacaaattgacattta 417  Q
    |  ||||| | |||||||| |||||| ||| ||||||||||||| |||||| | |||| ||||||||    
T  29236707 acgttctagtaaaatatacgagcaatggttcaaacatgacttttacccacataaaaatagacattta 29236641  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 3516687 - 3516746
Alignment:
Q  253 ccgtctccgacaattctgaggcaccgttgtaatcttgacagttttaatttaaaaagtatt 312  Q
    |||| ||||||||||  ||||| ||||||||||||||||| || ||||||||||||||||    
T  3516687 ccgtttccgacaatttggaggctccgttgtaatcttgacaattctaatttaaaaagtatt 3516746  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 29236969 - 29236923
Alignment:
Q  254 cgtctccgacaattctgaggcaccgttgtaatcttgacagttttaat 300  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||||    
T  29236969 cgtctccgacaattcagaggccacgttgtaatcttgacagttttaat 29236923  T

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Target: chr1 (Bit Score: 44; Significance: 7e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 253 - 312
Target Start/End: Complemental strand, 41151487 - 41151428
Alignment:
Q  253 ccgtctccgacaattctgaggcaccgttgtaatcttgacagttttaatttaaaaagtatt 312  Q
    |||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||    
T  41151487 ccgtctccgacaattcggaggccctgttgtaatcttgacaattttaatttaaaaagtatt 41151428  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 417
Target Start/End: Complemental strand, 13791269 - 13791191
Alignment:
Q  339 tgacaaacatctatattctacttaaatatacaagcaattgtttaaacatgacttttgcccacagacaaattgacattta 417  Q
    |||||||||||||| ||  | ||||||||||||| |||  |||||| ||||||||| |||||||| ||||  |||||||    
T  13791269 tgacaaacatctatgtttcagttaaatatacaagtaatgatttaaatatgacttttacccacagaaaaataaacattta 13791191  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 312
Target Start/End: Original strand, 38703106 - 38703164
Alignment:
Q  254 cgtctccgacaattctgaggcaccgttgtaatcttgacagttttaatttaaaaagtatt 312  Q
    ||||||||| ||||  ||| | ||||||||||||||||| |||| ||||||||||||||    
T  38703106 cgtctccgataatttggagtccccgttgtaatcttgacaattttcatttaaaaagtatt 38703164  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 417
Target Start/End: Original strand, 39329001 - 39329093
Alignment:
Q  325 aacatcacttagaatgacaaacatctatattctacttaaatatacaagcaattgtttaaacatgacttttgcccacagacaaattgacattta 417  Q
    ||||||||||||  |||||||||| || |||||| | ||||||||  ||||||||| ||| || |||||| || ||||| |||| ||| ||||    
T  39329001 aacatcacttagcgtgacaaacatatacattctagtcaaatatacgcgcaattgttcaaaaataacttttaccgacagataaatagacgttta 39329093  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 354 - 417
Target Start/End: Complemental strand, 41151385 - 41151321
Alignment:
Q  354 ttctacttaaatatacaagc-aattgtttaaacatgacttttgcccacagacaaattgacattta 417  Q
    ||||| |||||||||||||| ||| ||| |||||| |||||| |||||| |||||| ||||||||    
T  41151385 ttctagttaaatatacaagcaaatggttcaaacataacttttacccacaaacaaatagacattta 41151321  T

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Target: scaffold0051 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0051
Description:

Target: scaffold0051; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 19672 - 19731
Alignment:
Q  253 ccgtctccgacaattctgaggcaccgttgtaatcttgacagttttaatttaaaaagtatt 312  Q
    |||| ||||||||||| ||||| ||||||||||||||||| ||| |||||||||||||||    
T  19672 ccgtatccgacaattcggaggctccgttgtaatcttgacaatttaaatttaaaaagtatt 19731  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 331 - 401
Target Start/End: Original strand, 6120005 - 6120075
Alignment:
Q  331 acttagaatgacaaacatctatattctacttaaatatacaagcaattgtttaaacatgacttttgcccaca 401  Q
    ||||||| | ||||||||||| || ||| ||||||||||||||||| ||| ||||||||||||| ||||||    
T  6120005 acttagagtaacaaacatctacatcctagttaaatatacaagcaatggttcaaacatgacttttacccaca 6120075  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 253 - 312
Target Start/End: Original strand, 22607113 - 22607172
Alignment:
Q  253 ccgtctccgacaattctgaggcaccgttgtaatcttgacagttttaatttaaaaagtatt 312  Q
    |||||||||| ||||| ||||| | ||| ||||||||||| |||| ||||||||||||||    
T  22607113 ccgtctccgataattcggaggccctgttataatcttgacaatttttatttaaaaagtatt 22607172  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Complemental strand, 9860357 - 9860300
Alignment:
Q  255 gtctccgacaattctgaggcaccgttgtaatcttgacagttttaatttaaaaagtatt 312  Q
    |||||| ||||||| |||  |||||||||||||||| | |||||||||||||| ||||    
T  9860357 gtctccaacaattcggagataccgttgtaatcttgataattttaatttaaaaaatatt 9860300  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 312
Target Start/End: Complemental strand, 19116918 - 19116860
Alignment:
Q  254 cgtctccgacaattctgaggcaccgttgtaatcttgacagttttaatttaaaaagtatt 312  Q
    ||||||| | ||||| ||||  ||||||||||||||| | |||||||||||||||||||    
T  19116918 cgtctccaataattcggaggttccgttgtaatcttgataattttaatttaaaaagtatt 19116860  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 311
Target Start/End: Original strand, 26554214 - 26554271
Alignment:
Q  254 cgtctccgacaattctgaggcaccgttgtaatcttgacagttttaatttaaaaagtat 311  Q
    ||||||||| ||||  ||||| ||||| ||||||||||| || |||||||||||||||    
T  26554214 cgtctccgataattgggaggccccgttataatcttgacaattgtaatttaaaaagtat 26554271  T

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