View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6750_low_7 (Length: 309)
Name: NF6750_low_7
Description: NF6750
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6750_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 28871082 - 28870784
Alignment:
| Q |
1 |
ggcaagagctttagagcacatgttgcctataaaaatggcttagctatactataccattgaaaatgaaagaaagactaaaatttatcaaataatgttcata |
100 |
Q |
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| T |
28871082 |
ggcaagagctttagagcacatgttgcctataaaaatggcttagctatactataccattgaaaatgaaagaaagactaaaatttatcaaacaatgttcata |
28870983 |
T |
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| Q |
101 |
tcccactccttgatcaacgggaaagacgactcaaaaaatttatgaacagacctgaagaacccaatgagcacagcttaagaatcttgctacgccaagtgca |
200 |
Q |
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| T |
28870982 |
tcccactccttgatcaacgggaaagacgactcaaaaaatttatgaacagacctgaagaacccaatgagcacagcttaagaatcttgctacgccaagtgca |
28870883 |
T |
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| Q |
201 |
aaaacataatgagcagtgaatggctcaacaatctgaaagtacaaaatgaaacaattcagaaggaaagtaatagaatcagatcccatacattagatgatg |
299 |
Q |
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| T |
28870882 |
aaaacgtaatgagcagtgaatggctcaacaatctgaaagtacaaaatgaaacaattcagaaggaaagtaatagaatcagatcccatacattagatgatg |
28870784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 145 - 240
Target Start/End: Original strand, 53124952 - 53125047
Alignment:
| Q |
145 |
aacagacctgaagaacccaatgagcacagcttaagaatcttgctacgccaagtgcaaaaacataatgagcagtgaatggctcaacaatctgaaagt |
240 |
Q |
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|||| ||||| ||||||||||| ||||| || ||||| ||||| || ||||| ||||||||||| || || |||||||| |||||||||||||||| |
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| T |
53124952 |
aacaaacctgcagaacccaatgtgcacaactcaagaaccttgcaactccaagggcaaaaacatagtgtgctgtgaatggttcaacaatctgaaagt |
53125047 |
T |
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