View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6753_high_10 (Length: 289)
Name: NF6753_high_10
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6753_high_10 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 43129406 - 43129119
Alignment:
| Q |
1 |
aaagacaaccacaaaaatgctgtccatgaaggctcaacgaaggctcagnnnnnnnnnnnnnnnnngggctcaaaagggaagaatggtggctcagtgaagg |
100 |
Q |
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| T |
43129406 |
aaagacaacaacaaaaatgctgtccatgaaggctcaacgaaggctcagaaaagaaaaaagaaaaagggctcaaaagggaagaatggtggctcagtgaagg |
43129307 |
T |
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| Q |
101 |
tgaagaaggaggaggaatgctacgatccttcactgccagctgggataaatttacccatggagtggacttactaagccaacaattctaagggctccatttt |
200 |
Q |
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| T |
43129306 |
tgaagaaggaggaggaatgctacgatccttcactgccagctgggataaatttacccatggagtggacttactaagccaacaattctaa-ggctccatttt |
43129208 |
T |
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| Q |
201 |
gaaggcaatgaaagtgagaataatctataagctcaaataatgttttaagaattatcaaataaatattgaaagacattggaactatactt |
289 |
Q |
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| T |
43129207 |
gaaggcaatgaaagtgagaataatctataagctcaaataatgttttaagaattatcaaataaatattgaaagacattggaactatactt |
43129119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 69 - 181
Target Start/End: Complemental strand, 43139595 - 43139484
Alignment:
| Q |
69 |
ctcaaaagggaagaatggtggctcagtgaaggtgaagaaggaggaggaatgctacgatccttcactgccagctgggataaatttacccatggagtggact |
168 |
Q |
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| T |
43139595 |
ctcaaaagggaagaatggtgactcagagaaggtgaa-aagaaggaggaatgtcatgatcattctctgcctcctggaatagttttacccacggagtggact |
43139497 |
T |
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| Q |
169 |
tactaagccaaca |
181 |
Q |
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| T |
43139496 |
tactaatccaaca |
43139484 |
T |
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