View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6753_high_16 (Length: 229)
Name: NF6753_high_16
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6753_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 55; Significance: 9e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 7 - 69
Target Start/End: Complemental strand, 7730925 - 7730864
Alignment:
| Q |
7 |
ataatatcatattaataattttctaaatttccacaatccattctttgcattcttacaacattt |
69 |
Q |
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| T |
7730925 |
ataatatcatattaataattttctaaatttccacaatccattc-ttgcattcttacaacattt |
7730864 |
T |
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Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 161 - 228
Target Start/End: Complemental strand, 7726335 - 7726268
Alignment:
| Q |
161 |
ttgagaccttctctttgtgcaaaagataaacaagagtgcaattatctgcttcgaagagttaatttggt |
228 |
Q |
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| T |
7726335 |
ttgagaccttctctttgtgcagaagataaacaagagtgcaattatccatttctaagagttaatttggt |
7726268 |
T |
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