View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6753_high_2 (Length: 485)
Name: NF6753_high_2
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6753_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 1 - 466
Target Start/End: Complemental strand, 28206106 - 28205642
Alignment:
| Q |
1 |
tataaattaagattagctcttgcaagtgcaaatgtctctgaattacaggtaaggaacttcatcaaaaactttgaattagttttccaatgtaatcatcaaa |
100 |
Q |
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| T |
28206106 |
tataaattaagattagctcttgcaagtgcaaatgtctctgaattacaggtaaggaacttcatcaaaaactttctattagttttccaatgtaatcatcaaa |
28206007 |
T |
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| Q |
101 |
tttgttaagaagaaaatggtatataaactagtttacactaacatcaaaaataaaaattcaatattttacaattacttttaaaatacggttataagataag |
200 |
Q |
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| T |
28206006 |
tttgttaagaagaaaatggtatataaactagtttacactaacatcaaaaataaaaattcaatattttacgattacttctaaaatacggttataagataag |
28205907 |
T |
|
| Q |
201 |
tttatacgaacccacttgagttgatccggtgatattgatttgggatttggaagtgtacttctcttcaaagtctcggattcgacctggttatacgaaccca |
300 |
Q |
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| T |
28205906 |
tttatacgaacccacttaagttgacccgatgatattgatttggaatttggaagtgtgcttttcttaaaggtctcggattcgacctgattatacgaaccca |
28205807 |
T |
|
| Q |
301 |
cattgttaaatgctatcacttttcttctgtctcatctcactattttgtttattttgaatttaaaggttagagtgaatgatgaaaaacaagatcctccact |
400 |
Q |
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| T |
28205806 |
cattgttaaatg-tatcacttttcttctctctcatctcactattttgtttattttgaatttaaaggttagagtgaatgatgaaaaacaagatcctccact |
28205708 |
T |
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| Q |
401 |
atttactacgggggtgattgggaaggacaatgcaatagctagacatggaattcatggactctattg |
466 |
Q |
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| T |
28205707 |
atttactacgggagtgattgggaaggacaatgcaatagctagacatggaattcatggactctattg |
28205642 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 248
Target Start/End: Complemental strand, 46174460 - 46174421
Alignment:
| Q |
209 |
aacccacttgagttgatccggtgatattgatttgggattt |
248 |
Q |
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| T |
46174460 |
aacccacttgggttggtccggtgatattgatttgggattt |
46174421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 12633009 - 12633066
Alignment:
| Q |
209 |
aacccacttgagttgatccggtgatattgatttgggatttggaagtgtacttctcttc |
266 |
Q |
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| T |
12633009 |
aacccacttgggttgtcccggtgatattgacttgggatttgggagtgtgctcctcttc |
12633066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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