View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6753_high_5 (Length: 388)
Name: NF6753_high_5
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6753_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 119 - 324
Target Start/End: Original strand, 30299224 - 30299429
Alignment:
| Q |
119 |
tgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaactgtcgttagcgcttcctcggatctctctttgcttgg |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30299224 |
tgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaactgtcgttagcgcttcctcggatctctctttgcttgg |
30299323 |
T |
|
| Q |
219 |
atttggtatcaatgctgagaacaacgagaggaacttccttgcaggtaaactattttatatacatgtctcttcaagtttgttttgcacaaactaataaata |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30299324 |
atttggtatcaatgctgagaacaacgagaggaacttccttgcaggtaaactattttatatacatgtctcttcaagtttgttttgcacaaactaataaata |
30299423 |
T |
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| Q |
319 |
actttg |
324 |
Q |
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|||||| |
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| T |
30299424 |
actttg |
30299429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 30315349 - 30315493
Alignment:
| Q |
121 |
caaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaactgtcgttagcgcttcctcggatctctctttgcttggat |
220 |
Q |
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|||||||| || ||||||||||||||||||||||| ||||||||||| ||||||||||||| |||||| | |||||||||||||||||||||||||||| |
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| T |
30315349 |
caaaggtatagggctaggttgtctccaggtgatgtttatgtaattcccgcaggtcatccaattgtcgtaaaggcttcctcggatctctctttgcttggat |
30315448 |
T |
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| Q |
221 |
ttggtatcaatgctgagaacaacgagaggaacttccttgcaggta |
265 |
Q |
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|||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
30315449 |
ttggtatcaatgctgagaacaatcagaggaacttccttgctggta |
30315493 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 119 - 265
Target Start/End: Original strand, 30291800 - 30291946
Alignment:
| Q |
119 |
tgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaactgtcgttagcgcttcctcggatctctctttgcttgg |
218 |
Q |
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||||||||||||| ||||||||| ||||||||||||| ||||||||||| |||||| |||||| |||||| | ||||| |||||||||||||||||||| |
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| T |
30291800 |
tgcaaaggtacagggctaggttgactccaggtgatgtttatgtaattccagcaggttatccaaatgtcgtaaaagcttcgtcggatctctctttgcttgg |
30291899 |
T |
|
| Q |
219 |
atttggtatcaatgctgagaacaacgagaggaacttccttgcaggta |
265 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||| |||| |
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| T |
30291900 |
atttggtatcaatgctgagaacaaccagaggagcttccttgctggta |
30291946 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 119 - 265
Target Start/End: Original strand, 30304434 - 30304580
Alignment:
| Q |
119 |
tgcaaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaactgtcgttagcgcttcctcggatctctctttgcttgg |
218 |
Q |
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|
||||||||||||| ||||||||| ||||||||||||| ||||||||||| |||||| |||||| |||||| | ||||| |||||||||||||||||||| |
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| T |
30304434 |
tgcaaaggtacagggctaggttgactccaggtgatgtttatgtaattccagcaggttatccaaatgtcgtaaaagcttcgtcggatctctctttgcttgg |
30304533 |
T |
|
| Q |
219 |
atttggtatcaatgctgagaacaacgagaggaacttccttgcaggta |
265 |
Q |
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||||||||||||||||||||||||| |||||| ||||||||| |||| |
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| T |
30304534 |
atttggtatcaatgctgagaacaaccagaggagcttccttgctggta |
30304580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 121 - 265
Target Start/End: Original strand, 30286768 - 30286912
Alignment:
| Q |
121 |
caaaggtacagagctaggttgtctccaggtgatgtgtatgtaattccggcaggtcatccaactgtcgttagcgcttcctcggatctctctttgcttggat |
220 |
Q |
| |
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|||||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| | ||||| |||||||||||||||||||||| |
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| T |
30286768 |
caaaggtatagggctaggttgtctccaggtgatgtttatgtaattccggcaggtcatccaattgtcgtaactgcttcttcggatctctctttgcttggat |
30286867 |
T |
|
| Q |
221 |
ttggtatcaatgctgagaacaacgagaggaacttccttgcaggta |
265 |
Q |
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||||||||||||| |||||||| | |||||||||||||| |||| |
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| T |
30286868 |
ttggtatcaatgcggagaacaatcaaaggaacttccttgctggta |
30286912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 30286662 - 30286691
Alignment:
| Q |
18 |
agaaggaaaaggagaatttgaacttgtggg |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
30286662 |
agaaggaaaaggagaatttgaacttgtggg |
30286691 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 30291696 - 30291725
Alignment:
| Q |
18 |
agaaggaaaaggagaatttgaacttgtggg |
47 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
30291696 |
agaaggaaaaggagaatttgaacttgtggg |
30291725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 30315243 - 30315272
Alignment:
| Q |
18 |
agaaggaaaaggagaatttgaacttgtggg |
47 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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| T |
30315243 |
agaaggaaaaggagaatttgaacttgtggg |
30315272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 30299124 - 30299152
Alignment:
| Q |
19 |
gaaggaaaaggagaatttgaacttgtggg |
47 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
30299124 |
gaaggaaaaggagaatttgaacttgtggg |
30299152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 47
Target Start/End: Original strand, 30304331 - 30304359
Alignment:
| Q |
19 |
gaaggaaaaggagaatttgaacttgtggg |
47 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
30304331 |
gaaggaaaaggagaatttgaacttgtggg |
30304359 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 193 - 271
Target Start/End: Original strand, 46810259 - 46810337
Alignment:
| Q |
193 |
gcttcctcggatctctctttgcttggatttggtatcaatgctgagaacaacgagaggaacttccttgcaggtaaactat |
271 |
Q |
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||||||||| ||||| ||| ||||| ||||||||||||||||||||||| |||| ||||| |||||||||| ||||| |
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| T |
46810259 |
gcttcctcgaatctcaatttccttggctttggtatcaatgctgagaacaatcagagaaactttcttgcaggtatactat |
46810337 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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