View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6753_high_6 (Length: 363)
Name: NF6753_high_6
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6753_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 4 - 220
Target Start/End: Complemental strand, 221427 - 221211
Alignment:
| Q |
4 |
tttggtgttttggtatttgataatttcaatgcattgcaccaacaagtaatgtaataggcacttatgtattctgttttatattgcttatataggatgtctt |
103 |
Q |
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| T |
221427 |
tttgatgttttggtatttgataatttcaatgcattgcaccaacaagtaatgtaataggcactt-tgtattctgttttatattgcttatataggatgtctt |
221329 |
T |
|
| Q |
104 |
tgctttttcgaccttgaagcagtgtagaattagaacttaggtactgatgtagtcagtgacatgtaaatgaaatggctatgatgacaggcct-aaaatgaa |
202 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| || |
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| T |
221328 |
tgctttttcgaccttgaagcagtgtagaattagaacttaggtactaatgtagtcagtgacatgtaaatgaaatggctatgatgacaggcctaaaaatcaa |
221229 |
T |
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| Q |
203 |
catgccatgttgccttcc |
220 |
Q |
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|||||||||||||||||| |
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| T |
221228 |
catgccatgttgccttcc |
221211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 244 - 347
Target Start/End: Complemental strand, 221209 - 221106
Alignment:
| Q |
244 |
tattagtttttagggttcgaaccctgaaccttctagtagcacgcctttgatgtctctcatatcaccaaccgaactgcgttcttgtgacggtcaatggctc |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
221209 |
tattagtttttagggttcgaaccctgaaccttctagtagtacgcctttgatgtctctcatatcaccaaccgaactgcattcttgtgacggtcaatggctc |
221110 |
T |
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| Q |
344 |
ttat |
347 |
Q |
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|||| |
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| T |
221109 |
ttat |
221106 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 206351 - 206319
Alignment:
| Q |
10 |
gttttggtatttgataatttcaatgcattgcac |
42 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
206351 |
gttttggtatttgataatttccatgcattgcac |
206319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 10 - 42
Target Start/End: Complemental strand, 209778 - 209746
Alignment:
| Q |
10 |
gttttggtatttgataatttcaatgcattgcac |
42 |
Q |
| |
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||||||||||||||||||||| ||||||||||| |
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| T |
209778 |
gttttggtatttgataatttccatgcattgcac |
209746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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