View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6753_high_7 (Length: 361)

Name: NF6753_high_7
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6753_high_7
NF6753_high_7
[»] chr4 (26 HSPs)
chr4 (181-353)||(8011169-8011341)
chr4 (182-310)||(8889233-8889361)
chr4 (174-310)||(5361959-5362095)
chr4 (181-310)||(17466083-17466212)
chr4 (176-310)||(36120823-36120957)
chr4 (181-281)||(7044731-7044831)
chr4 (176-310)||(13551618-13551752)
chr4 (193-310)||(9770128-9770245)
chr4 (199-310)||(9911407-9911518)
chr4 (192-310)||(23064959-23065077)
chr4 (176-309)||(13023566-13023702)
chr4 (176-254)||(6347116-6347194)
chr4 (176-310)||(10142898-10143032)
chr4 (181-310)||(5375668-5375797)
chr4 (174-281)||(18459733-18459840)
chr4 (230-310)||(37240311-37240390)
chr4 (179-281)||(7815559-7815661)
chr4 (176-254)||(24719516-24719594)
chr4 (181-280)||(4156767-4156866)
chr4 (176-248)||(7452419-7452491)
chr4 (308-356)||(18459647-18459695)
chr4 (275-310)||(4157053-4157088)
chr4 (275-310)||(17466280-17466315)
chr4 (310-344)||(7452563-7452597)
chr4 (276-313)||(5361855-5361892)
chr4 (308-356)||(6347014-6347062)
[»] chr5 (17 HSPs)
chr5 (175-310)||(19578940-19579075)
chr5 (181-310)||(18843719-18843848)
chr5 (176-310)||(21059152-21059285)
chr5 (181-310)||(43234872-43235001)
chr5 (176-310)||(18051526-18051660)
chr5 (176-310)||(22645715-22645849)
chr5 (181-302)||(20923722-20923843)
chr5 (181-310)||(38158250-38158379)
chr5 (181-309)||(23172425-23172557)
chr5 (185-295)||(27340197-27340307)
chr5 (226-310)||(19979648-19979732)
chr5 (195-310)||(41688661-41688775)
chr5 (181-251)||(19042444-19042514)
chr5 (222-308)||(20320988-20321074)
chr5 (177-250)||(24106641-24106714)
chr5 (181-243)||(20320928-20320990)
chr5 (310-355)||(26021408-26021453)
[»] chr2 (29 HSPs)
chr2 (181-356)||(25539176-25539351)
chr2 (176-310)||(31237973-31238107)
chr2 (181-310)||(35565950-35566079)
chr2 (176-310)||(30432418-30432552)
chr2 (174-306)||(23863321-23863453)
chr2 (181-309)||(31578009-31578136)
chr2 (175-310)||(20063712-20063847)
chr2 (176-310)||(1404782-1404916)
chr2 (176-310)||(36429847-36429981)
chr2 (181-356)||(19491859-19492030)
chr2 (182-313)||(15588843-15588973)
chr2 (176-283)||(1690785-1690892)
chr2 (176-250)||(17995054-17995128)
chr2 (181-276)||(16766714-16766809)
chr2 (175-237)||(15627653-15627715)
chr2 (176-280)||(5395674-5395778)
chr2 (215-279)||(31023261-31023325)
chr2 (275-310)||(13502566-13502601)
chr2 (276-310)||(1404985-1405019)
chr2 (260-310)||(1690724-1690774)
chr2 (176-282)||(15266081-15266187)
chr2 (182-249)||(27406782-27406851)
chr2 (175-264)||(27750194-27750283)
chr2 (275-309)||(31237870-31237904)
chr2 (193-281)||(13503067-13503156)
chr2 (215-280)||(34841594-34841659)
chr2 (181-221)||(29660897-29660937)
chr2 (277-309)||(34841784-34841816)
chr2 (275-303)||(36430049-36430077)
[»] chr1 (28 HSPs)
chr1 (183-353)||(17055952-17056122)
chr1 (176-310)||(9955031-9955165)
chr1 (181-310)||(12513285-12513414)
chr1 (176-303)||(21846271-21846398)
chr1 (176-310)||(13100190-13100324)
chr1 (176-310)||(41032666-41032800)
chr1 (181-310)||(13276262-13276391)
chr1 (181-310)||(19009942-19010071)
chr1 (181-310)||(23528660-23528789)
chr1 (176-310)||(9352059-9352193)
chr1 (176-310)||(9327211-9327345)
chr1 (176-310)||(18304807-18304941)
chr1 (181-252)||(30619079-30619150)
chr1 (181-310)||(42180061-42180190)
chr1 (175-310)||(25146765-25146899)
chr1 (176-309)||(16125452-16125588)
chr1 (215-310)||(17869746-17869841)
chr1 (176-281)||(18337547-18337651)
chr1 (193-310)||(9128836-9128953)
chr1 (181-253)||(14074423-14074495)
chr1 (181-281)||(27917477-27917577)
chr1 (195-242)||(18228230-18228277)
chr1 (181-251)||(12800636-12800706)
chr1 (176-281)||(24117006-24117111)
chr1 (266-310)||(32881416-32881460)
chr1 (275-309)||(16434775-16434809)
chr1 (257-295)||(18228281-18228319)
chr1 (276-310)||(47785958-47785992)
[»] scaffold0186 (1 HSPs)
scaffold0186 (176-310)||(8442-8576)
[»] chr6 (24 HSPs)
chr6 (174-310)||(30912408-30912544)
chr6 (181-310)||(26053292-26053421)
chr6 (181-310)||(26073345-26073474)
chr6 (176-310)||(27233273-27233407)
chr6 (181-310)||(17250061-17250190)
chr6 (176-302)||(6943464-6943590)
chr6 (175-310)||(11327567-11327702)
chr6 (176-310)||(17543736-17543870)
chr6 (192-310)||(23897826-23897944)
chr6 (181-310)||(15528106-15528235)
chr6 (185-310)||(22498881-22499006)
chr6 (176-310)||(7223518-7223645)
chr6 (181-309)||(7918378-7918506)
chr6 (184-310)||(19748340-19748466)
chr6 (181-309)||(2912245-2912372)
chr6 (176-306)||(10509023-10509153)
chr6 (176-310)||(17103201-17103328)
chr6 (226-310)||(21354789-21354873)
chr6 (184-254)||(3573984-3574054)
chr6 (176-251)||(5422803-5422878)
chr6 (182-269)||(18491074-18491161)
chr6 (215-279)||(4841946-4842010)
chr6 (298-356)||(3573921-3573979)
chr6 (193-253)||(8285776-8285836)
[»] chr7 (35 HSPs)
chr7 (176-310)||(26281306-26281439)
chr7 (181-317)||(22687653-22687789)
chr7 (35-144)||(7726020-7726127)
chr7 (181-310)||(24990067-24990196)
chr7 (176-310)||(24725473-24725607)
chr7 (181-310)||(5058533-5058662)
chr7 (198-310)||(8343796-8343908)
chr7 (186-310)||(11324988-11325111)
chr7 (175-310)||(39182258-39182392)
chr7 (176-306)||(14055250-14055380)
chr7 (176-306)||(14365278-14365408)
chr7 (176-309)||(8330042-8330175)
chr7 (181-310)||(8346529-8346658)
chr7 (175-310)||(7730339-7730473)
chr7 (176-310)||(27221417-27221551)
chr7 (181-310)||(5715294-5715422)
chr7 (184-301)||(8571250-8571367)
chr7 (181-310)||(11326390-11326519)
chr7 (181-310)||(44944841-44944974)
chr7 (1-151)||(7736370-7736518)
chr7 (176-310)||(9685240-9685374)
chr7 (181-310)||(4247360-4247489)
chr7 (217-310)||(1977692-1977785)
chr7 (176-310)||(17811350-17811480)
chr7 (181-296)||(21846436-21846550)
chr7 (197-310)||(27509939-27510052)
chr7 (181-280)||(30294179-30294275)
chr7 (257-319)||(20570872-20570934)
chr7 (186-306)||(26617472-26617596)
chr7 (308-355)||(21157714-21157761)
chr7 (130-171)||(7725740-7725781)
chr7 (194-250)||(4574488-4574544)
chr7 (275-310)||(8329937-8329972)
chr7 (176-254)||(21157826-21157904)
chr7 (275-309)||(26565442-26565476)
[»] chr3 (28 HSPs)
chr3 (176-310)||(29067283-29067417)
chr3 (181-356)||(24649638-24649814)
chr3 (181-310)||(20756043-20756172)
chr3 (176-310)||(28745769-28745903)
chr3 (176-310)||(24620196-24620333)
chr3 (176-310)||(8156126-8156261)
chr3 (181-310)||(3449288-3449416)
chr3 (177-302)||(21963429-21963554)
chr3 (177-302)||(21985865-21985990)
chr3 (181-310)||(39427906-39428035)
chr3 (176-310)||(17064320-17064454)
chr3 (195-307)||(22494780-22494892)
chr3 (184-303)||(30727694-30727813)
chr3 (194-302)||(22137295-22137403)
chr3 (184-310)||(22356048-22356175)
chr3 (176-281)||(15806531-15806635)
chr3 (199-281)||(10872971-10873053)
chr3 (176-310)||(25870363-25870506)
chr3 (176-281)||(27676355-27676460)
chr3 (176-271)||(17796267-17796362)
chr3 (176-271)||(17796376-17796471)
chr3 (176-271)||(19104707-19104802)
chr3 (176-271)||(19104816-19104911)
chr3 (181-254)||(28135726-28135799)
chr3 (257-310)||(42696927-42696980)
chr3 (275-310)||(17064508-17064543)
chr3 (176-271)||(17796485-17796580)
chr3 (176-271)||(19104925-19105020)
[»] chr8 (27 HSPs)
chr8 (180-309)||(3094250-3094379)
chr8 (176-310)||(5922048-5922182)
chr8 (181-308)||(45403033-45403160)
chr8 (181-310)||(15294674-15294803)
chr8 (181-310)||(15475043-15475172)
chr8 (181-310)||(17646997-17647126)
chr8 (176-310)||(11879599-11879733)
chr8 (176-310)||(11897015-11897149)
chr8 (181-310)||(19704451-19704581)
chr8 (176-310)||(31424162-31424296)
chr8 (176-310)||(27836460-27836594)
chr8 (197-310)||(29384313-29384425)
chr8 (192-310)||(22910198-22910316)
chr8 (216-313)||(6810861-6810957)
chr8 (225-310)||(23142223-23142308)
chr8 (175-252)||(477101-477178)
chr8 (176-279)||(15761466-15761569)
chr8 (194-254)||(24056620-24056680)
chr8 (176-225)||(23136348-23136397)
chr8 (197-309)||(15231744-15231856)
chr8 (181-296)||(6292352-6292467)
chr8 (176-310)||(7489279-7489414)
chr8 (275-310)||(29384205-29384240)
chr8 (207-280)||(8582000-8582073)
chr8 (266-310)||(9212251-9212295)
chr8 (176-228)||(9212296-9212348)
chr8 (277-309)||(26575017-26575049)
[»] scaffold0042 (2 HSPs)
scaffold0042 (174-310)||(93702-93836)
scaffold0042 (275-309)||(93599-93633)
[»] scaffold0510 (1 HSPs)
scaffold0510 (192-310)||(96-215)
[»] scaffold0417 (1 HSPs)
scaffold0417 (192-310)||(7451-7569)
[»] scaffold0048 (2 HSPs)
scaffold0048 (176-279)||(48816-48918)
scaffold0048 (217-279)||(61410-61472)
[»] scaffold0036 (1 HSPs)
scaffold0036 (176-254)||(37218-37296)
[»] scaffold0603 (1 HSPs)
scaffold0603 (176-254)||(9072-9150)
[»] scaffold0115 (1 HSPs)
scaffold0115 (181-250)||(35115-35184)
[»] scaffold0259 (1 HSPs)
scaffold0259 (277-309)||(18587-18619)


Alignment Details
Target: chr4 (Bit Score: 109; Significance: 9e-55; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 109; E-Value: 9e-55
Query Start/End: Original strand, 181 - 353
Target Start/End: Complemental strand, 8011341 - 8011169
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| || ||| |||||||||||| || |||||||||| |||||||||||||||||||||||||||||  |||||||||||||| ||||||||     
T  8011341 ttgtcaaaatcccaactcaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatgagcaaaatt 8011242  T
Q  281 catcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtc 353  Q
    |||||||||||||||| ||||| |||||||| ||||||| |||| ||||||||||||||||||||| ||||||    
T  8011241 catcgattttgattgcgattttgcgatttcaaacaaaatcgcaggattttaaagggttttgaagaattttgtc 8011169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 182 - 310
Target Start/End: Original strand, 8889233 - 8889361
Alignment:
Q  182 tgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcc 281  Q
    ||||||||| |||||||||||||||||||||| ||||||| || |||||||||| |||||||||||||| ||| |||||||||||||||| ||||||| |    
T  8889233 tgtcaaaatcccgacttaaatcctaaaatccaggattttgtgaatttcttcaccatcaacgactcaaattcataatagaatcccaaaataggcaaaattc 8889332  T
Q  282 atcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||| |||||||||||||    
T  8889333 atcgattttgattgcgattttacgatttc 8889361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 174 - 310
Target Start/End: Complemental strand, 5362095 - 5361959
Alignment:
Q  174 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 273  Q
    |||||| |||||||||| ||||||||||||||||||| || |||||||||| |||||||| ||||||||||||||||||||  |||||| |||||||| |    
T  5362095 tacattgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaattccaaaatagg 5361996  T
Q  274 caaaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||| ||||||||||||||||  |||||||||||||    
T  5361995 caaaacccatcgattttgattgagattttacgatttc 5361959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 17466083 - 17466212
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    ||||||||||||| ||||||||| ||||||  | ||||||||||||||||||| ||| || ||||||||||||| ||||||||| |||||||||||||||    
T  17466083 ttgtcaaaattccaacttaaatcttaaaatttaggattttgcgattttcttcatctttaaggactcaaatccataatagaatcctaaaataagcaaaatc 17466182  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    ||||||||| |||||| |||||||||||||    
T  17466183 catcgatttagattgcgattttacgatttc 17466212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 36120823 - 36120957
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| ||||||||||||||| ||||||  ||||||  | ||||||||||||||||||||||||||||||| |||||||| ||| ||| | ||||||||||    
T  36120823 cattgttgtcaaaattccgatttaaattttaaaatttaggattttgcgattttcttcaccttcaacgacttaaatccataataaaattctaaaataagca 36120922  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    |||| |||||||||||||||| |||||||||||||    
T  36120923 aaattcatcgattttgattgcgattttacgatttc 36120957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 181 - 281
Target Start/End: Original strand, 7044731 - 7044831
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| ||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||   |||||||||||||||||||||||    
T  7044731 ttgtcaaaatcccgacttaaatcctaaaatccatgattttgcaactttattcaccttcaacgactcaaatccatagcagaatcccaaaataagcaaaatc 7044830  T
Q  281 c 281  Q
    |    
T  7044831 c 7044831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 13551752 - 13551618
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| ||||||||||  ||||||| ||||||||||  | |||||||||| ||| |||||||||||||||||||||||||  ||||||  |||||||  ||    
T  13551752 cattgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaatagaca 13551653  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||| ||||| |||||| ||||||    
T  13551652 aaatccatcgattttaattgcgattttatgatttc 13551618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 193 - 310
Target Start/End: Original strand, 9770128 - 9770245
Alignment:
Q  193 cgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttga 292  Q
    |||||||||| |||||||| | ||||||| || ||| |||||||||||||||||||||||||  |||||||| ||||||  ||||||| ||| |||||||    
T  9770128 cgacttaaattctaaaatctaggattttgtgacttttttcaccttcaacgactcaaatccatagtagaatcctaaaatagacaaaatctatcaattttga 9770227  T
Q  293 ttgcaattttacgatttc 310  Q
    |||| |||||||||||||    
T  9770228 ttgcgattttacgatttc 9770245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 199 - 310
Target Start/End: Complemental strand, 9911518 - 9911407
Alignment:
Q  199 aaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaa 298  Q
    |||||||||||| || |||||||| | ||||||||||||||||| |  ||||||||  |||||||| |||||  |||||||||||||||||||||||| |    
T  9911518 aaatcctaaaattcaagattttgcaactttcttcaccttcaacggcctaaatccatagtagaatcctaaaattggcaaaatccatcgattttgattgcga 9911419  T
Q  299 ttttacgatttc 310  Q
    ||||||||||||    
T  9911418 ttttacgatttc 9911407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 192 - 310
Target Start/End: Complemental strand, 23065077 - 23064959
Alignment:
Q  192 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttg 291  Q
    ||||||||||| ||||||||||  ||||||  | ||||||||| |||||||||||||||||||  |||||| | |||||| |  |||||||||||||||     
T  23065077 ccgacttaaattctaaaatccagtattttgtaactttcttcacattcaacgactcaaatccattgtagaattctaaaataggtcaaatccatcgatttta 23064978  T
Q  292 attgcaattttacgatttc 310  Q
    |||||||||||||||||||    
T  23064977 attgcaattttacgatttc 23064959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 176 - 309
Target Start/End: Original strand, 13023566 - 13023702
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaa-tccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaa--taa 272  Q
    |||| |||||||||| || ||||||||||||||| |  | |||||||||| ||||||||||||||| |||||||||||||  |||||||||||||  ||     
T  13023566 cattgttgtcaaaatcccaacttaaatcctaaaaatttaggattttgcgactttcttcaccttcaatgactcaaatccatagtagaatcccaaaaaatag 13023665  T
Q  273 gcaaaatccatcgattttgattgcaattttacgattt 309  Q
      |||||| ||||||||||||||| ||||||||||||    
T  13023666 ataaaatcaatcgattttgattgcgattttacgattt 13023702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 254
Target Start/End: Complemental strand, 6347194 - 6347116
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 254  Q
    |||||||||||||||||| ||||||||||||||||||| |||||||| | ||| || ||||||||||||||||||||||    
T  6347194 cattattgtcaaaattccaacttaaatcctaaaatccaggattttgcaactttatttaccttcaacgactcaaatccat 6347116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 10142898 - 10143032
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||| ||||| ||||||||||| |||||||  |  ||||||||| ||||| ||||||||| ||||||| |||||  || ||| ||||||||  ||    
T  10142898 cattgttgtgaaaatcccgacttaaattctaaaatttaatattttgcgactttctccaccttcaatgactcaagtccatagtataattccaaaatagaca 10142997  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||||  |||||||||||||    
T  10142998 aaatccatcgattttgattgtgattttacgatttc 10143032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 5375668 - 5375797
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| || || ||||| |||||||  | |||||||||| |||||||||||||||||||| |||| ||| |||||||   ||||||  ||||||     
T  5375668 ttgtcaaaatcccaacctaaattctaaaatttaagattttgcgactttcttcaccttcaacgactaaaattcataatagaattttaaaatagacaaaatt 5375767  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||||| ||||||||| |||||||||||||    
T  5375768 catcgactttgattgcgattttacgatttc 5375797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 174 - 281
Target Start/End: Complemental strand, 18459840 - 18459733
Alignment:
Q  174 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 273  Q
    |||||| |||| ||||| |||||| ||||||||||||||| |||||||||| | | ||||| |||||||||||||||||||   ||||||| |||||| |    
T  18459840 tacattgttgtaaaaatcccgactaaaatcctaaaatccaagattttgcgactgtattcactttcaacgactcaaatccatagcagaatcctaaaatagg 18459741  T
Q  274 caaaatcc 281  Q
    ||||||||    
T  18459740 caaaatcc 18459733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 230 - 310
Target Start/End: Original strand, 37240311 - 37240390
Alignment:
Q  230 ttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||||||||||||  ||||| ||||||||| ||| ||| |||||||||||||||| |||||||||||||    
T  37240311 ttcaccttcaacgactcaaatccatagtagaa-cccaaaataggcataattcatcgattttgattgcgattttacgatttc 37240390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 179 - 281
Target Start/End: Original strand, 7815559 - 7815661
Alignment:
Q  179 tattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaa 278  Q
    |||||| ||||| ||||||||||||||||||| ||  |||||| || ||| |||| ||| | ||||||||| ||||  ||||||||||||||| ||||||    
T  7815559 tattgttaaaatcccgacttaaatcctaaaatacagcattttgtgactttattcagcttaagcgactcaaacccatagtagaatcccaaaataggcaaaa 7815658  T
Q  279 tcc 281  Q
    |||    
T  7815659 tcc 7815661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 176 - 254
Target Start/End: Original strand, 24719516 - 24719594
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 254  Q
    |||| ||||||||||  |||||||| | ||||||| || |||||||||| ||| |||||||||||||||||||||||||    
T  24719516 cattgttgtcaaaatctcgacttaatttctaaaattcaagattttgcgactttattcaccttcaacgactcaaatccat 24719594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 280
Target Start/End: Original strand, 4156767 - 4156866
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| |||||||||||| ||||||  | ||||||  || ||| |||||||| |||||||||||||  |  |||||||| |||||||||||||||    
T  4156767 ttgtcaaaatcccgacttaaatcttaaaatttaggattttatgactttattcacctttaacgactcaaatctgtagtagaatcctaaaataagcaaaatc 4156866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 176 - 248
Target Start/End: Original strand, 7452419 - 7452491
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaa 248  Q
    |||| |||| ||||| ||||||||||| ||||||||||  ||||||| | ||| |||||||||||||||||||    
T  7452419 cattgttgtgaaaatcccgacttaaattctaaaatccagaattttgcaactttattcaccttcaacgactcaa 7452491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 18459695 - 18459647
Alignment:
Q  308 ttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 356  Q
    ||||||||||||||||| |||||||| |||||||||| | |||||||||    
T  18459695 ttcatacaaaattgcaggattttaaacggttttgaaggattttgtccat 18459647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 310
Target Start/End: Original strand, 4157053 - 4157088
Alignment:
Q  275 aaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||||||||| |||||||||||||    
T  4157053 aaaatccatcgattttgattgcgattttacgatttc 4157088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 310
Target Start/End: Original strand, 17466280 - 17466315
Alignment:
Q  275 aaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||||||||||||||||| |||||    
T  17466280 aaaatccatcgattttgattgcaattttacaatttc 17466315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 310 - 344
Target Start/End: Original strand, 7452563 - 7452597
Alignment:
Q  310 catacaaaattgcagaattttaaagggttttgaag 344  Q
    ||||||||||||||| |||||||||||||||||||    
T  7452563 catacaaaattgcaggattttaaagggttttgaag 7452597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 5361892 - 5361855
Alignment:
Q  276 aaatccatcgattttgattgcaattttacgatttcata 313  Q
    ||||||||||| ||||||||| ||||||||||||||||    
T  5361892 aaatccatcgactttgattgcgattttacgatttcata 5361855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 6347062 - 6347014
Alignment:
Q  308 ttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 356  Q
    |||| ||||||| |||| ||||||||||||||||||| | |||||||||    
T  6347062 ttcacacaaaatcgcaggattttaaagggttttgaaggattttgtccat 6347014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 2e-49; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 175 - 310
Target Start/End: Original strand, 19578940 - 19579075
Alignment:
Q  175 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 274  Q
    ||||| ||||||||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||||||    
T  19578940 acattgttgtcaaaattccaacttaaatcataaaatccaggattttgcgattttcttcaccttcaacgacttaaatccatagtagaatcccaaaataagc 19579039  T
Q  275 aaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||||||||| | |||||||||||    
T  19579040 aaaatccatcgattttgattgcgactttacgatttc 19579075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 18843719 - 18843848
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||| ||||||||||||||||||||| ||| || |||||||||| |||||||||||||||||||||||||||||  |||||||||||||||  ||||||     
T  18843719 ttgttaaaattccgacttaaatcctataattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaatcccaaaatagacaaaatt 18843818  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||||||| |||||||||    
T  18843819 catcgattttgattgcaattatacgatttc 18843848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 21059285 - 21059152
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| |||| ||||||||||||||| | |||||||||| ||||||||| |||||||||||||||||||| ||||||||| ||||| |||    
T  21059285 cattgttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcactttcaacgactcaaatccatg-tagaatccctaaataggca 21059187  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    |||| |||||||||||||||| |||||||||||||    
T  21059186 aaattcatcgattttgattgcgattttacgatttc 21059152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 43234872 - 43235001
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| || |||||||||||||||| || |||||||||| |||||||||||||||||||| ||||||||  |||||||| |||||| | ||||||    
T  43234872 ttgtcaaaatcccaacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgacttaaatccatagtagaatcctaaaataggaaaaatc 43234971  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||  |||||||||||||    
T  43234972 catcgattttgattgtgattttacgatttc 43235001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 18051660 - 18051526
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| |||||||||||||||||||  | |||||||||| |||||||| ||||||||||||||||| ||  |||||| | |||||| |||    
T  18051660 cattgttgtcaaaatcccgacttaaatcctaaaatataggattttgcgactttcttcaacttcaacgactcaaatctatagtagaattctaaaataggca 18051561  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||||| ||| |||||||||    
T  18051560 aaatccatcgattttgattgcgattgtacgatttc 18051526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 22645849 - 22645715
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||||||||| | ||||||||  || |||||||||||||| |    
T  22645849 cattgttgtcaaaatcccgacttaaatcctaaaatccagtattttgcgactttcttcaccttcaacgatttaaatccatagtaaaatcccaaaataagta 22645750  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    || |||||| ||||||||||| ||||||| |||||    
T  22645749 aattccatctattttgattgcgattttacaatttc 22645715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 181 - 302
Target Start/End: Original strand, 20923722 - 20923843
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| ||||||||||||||||||||||  ||||||||| |||||||||||||||||||  ||||||||  |||||||| |||||| ||||| ||    
T  20923722 ttgtcaaaatcccgacttaaatcctaaaatccagaattttgcgactttcttcaccttcaacgacctaaatccatagtagaatcctaaaataggcaaagtc 20923821  T
Q  281 catcgattttgattgcaatttt 302  Q
    |||||||||||||||| |||||    
T  20923822 catcgattttgattgcgatttt 20923843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 38158379 - 38158250
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    ||||||||||||||||||||||||||||||| | |||||||||| |||||| || |||||| |||||||||||   |||||||||||||||  |||||||    
T  38158379 ttgtcaaaattccgacttaaatcctaaaatctaggattttgcgactttcttgactttcaacaactcaaatccagagtagaatcccaaaatagacaaaatc 38158280  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    ||| ||||||| |||  |||||||||||||    
T  38158279 cattgattttggttgttattttacgatttc 38158250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 181 - 309
Target Start/End: Complemental strand, 23172557 - 23172425
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaa--- 277  Q
    |||||||||| |||||||||||||||||||  | |||||||||| |||||||| ||||||||||| ||||||||  |||||||||||||||  ||||       
T  23172557 ttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcatcttcaacgacttaaatccatagtagaatcccaaaatagacaaaatt 23172458  T
Q  278 -atccatcgattttgattgcaattttacgattt 309  Q
     ||| |||||||||||| || ||||||||||||    
T  23172457 catcgatcgattttgatcgcgattttacgattt 23172425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 185 - 295
Target Start/End: Complemental strand, 27340307 - 27340197
Alignment:
Q  185 caaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatc 284  Q
    |||||| |||||||||||| ||||||  |||||||||||| |||||||| ||||||||||||||||| ||  |||||||  |||||| ||||||| ||||    
T  27340307 caaaatcccgacttaaatcataaaatttatgattttgcgactttcttcatcttcaacgactcaaatctatagtagaatcttaaaataggcaaaattcatc 27340208  T
Q  285 gattttgattg 295  Q
    |||||||||||    
T  27340207 gattttgattg 27340197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 19979648 - 19979732
Alignment:
Q  226 tttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||| |||||||||||||||| |||| ||||||||||||| | ||||||||||| |||||||||||| |||||||||||||    
T  19979648 tttcttcatcttcaacgactcaaattcatggtagaatcccaaaacacgcaaaatccatggattttgattgcgattttacgatttc 19979732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 195 - 310
Target Start/End: Complemental strand, 41688775 - 41688661
Alignment:
Q  195 acttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgatt 294  Q
    |||||||||||||||| |  |||||||| |||||||||||||||||||||| ||||  ||  || ||| | |||||||||||||| ||||||||||||||    
T  41688775 acttaaatcctaaaattcg-gattttgcaattttcttcaccttcaacgacttaaatttatagtaaaattctaaaataagcaaaattcatcgattttgatt 41688677  T
Q  295 gcaattttacgatttc 310  Q
    || |||||||||||||    
T  41688676 gcgattttacgatttc 41688661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 19042514 - 19042444
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatc 251  Q
    |||||||||| || |||||||| |||||||  | ||||||| || ||||||||||||||||||||||||||    
T  19042514 ttgtcaaaatcccaacttaaattctaaaatttaagattttgtgactttcttcaccttcaacgactcaaatc 19042444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 222 - 308
Target Start/End: Original strand, 20320988 - 20321074
Alignment:
Q  222 cgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatt 308  Q
    ||||||||||||||||||| |||| ||||||||  || ||| ||||||||   ||||| |||| | ||||||||| |||||||||||    
T  20320988 cgattttcttcaccttcaatgactaaaatccatagtaaaattccaaaatagataaaattcatcaactttgattgcgattttacgatt 20321074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 177 - 250
Target Start/End: Original strand, 24106641 - 24106714
Alignment:
Q  177 attattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaat 250  Q
    |||||||||||||| | || ||||||| |||||| || |||||||| | ||||||||||  |||||||||||||    
T  24106641 attattgtcaaaatcctgatttaaatcataaaattcaggattttgcaactttcttcaccagcaacgactcaaat 24106714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 243
Target Start/End: Original strand, 20320928 - 20320990
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacga 243  Q
    |||||||||| || || |||||||||||||  | |||||||| | ||||||||||||||||||    
T  20320928 ttgtcaaaatcccaacctaaatcctaaaatttaagattttgcaactttcttcaccttcaacga 20320990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 310 - 355
Target Start/End: Original strand, 26021408 - 26021453
Alignment:
Q  310 catacaaaattgcagaattttaaagggttttgaagaactttgtcca 355  Q
    |||||||||| |||| ||||||||||||||||||| | ||||||||    
T  26021408 catacaaaatcgcaggattttaaagggttttgaaggattttgtcca 26021453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 181 - 356
Target Start/End: Complemental strand, 25539351 - 25539176
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||| ||||| |||| |||||||||||||| || || ||||| |||||||||||||||||||||| ||||||||   ||||||| |||||||||||||||    
T  25539351 ttgttaaaatcccgatttaaatcctaaaattcaagaatttgcaattttcttcaccttcaacgacttaaatccataggagaatccgaaaataagcaaaatc 25539252  T
Q  281 catcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 356  Q
    |||||||||||| ||| |||| ||||||||||||||||| |||| |||||||||||||||| |||| |||||||||    
T  25539251 catcgattttgactgcgatttaacgatttcatacaaaatcgcaggattttaaagggttttgtagaattttgtccat 25539176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 31238107 - 31237973
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| |||||||||||||||||||| | |||||||| | ||||||||||||||||||||||||| |||  |||||||  |||||| | |    
T  31238107 cattgttgtcaaaatcccgacttaaatcctaaaatctaggattttgccactttcttcaccttcaacgactcaaattcatagtagaatcttaaaataggaa 31238008  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||||| |||||||||||||    
T  31238007 aaatccatcgattttgattgcgattttacgatttc 31237973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 35566079 - 35565950
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| || |||||||||  ||||| || |||||||||| ||||||||  ||||| |||||||||||||| ||||||||||||||| ||||||||    
T  35566079 ttgtcaaaatcccaacttaaatcacaaaattcaggattttgcgactttcttcatattcaatgactcaaatccatggtagaatcccaaaataggcaaaatc 35565980  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||| ||||||||||||    
T  35565979 catcgattttgattgcagttttacgatttc 35565950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 30432418 - 30432552
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| | || |||||| |||||||| | |||||| ||| ||||||| |||||||||||||||||||||  ||||||| |||||||  ||    
T  30432418 cattgttgtcaaaatcctgatttaaattctaaaatctaggatttttcgactttcttcgccttcaacgactcaaatccatagtagaatctcaaaatagaca 30432517  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||||||||||||||||||||||    
T  30432518 aaatccatcgattttgattgcaattttacgatttc 30432552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 174 - 306
Target Start/End: Complemental strand, 23863453 - 23863321
Alignment:
Q  174 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 273  Q
    |||||| |||||||||| ||||||||||| |||||||| |  ||||||||| ||||||||| |||||||||| ||||||||  ||||||| ||||||| |    
T  23863453 tacattgttgtcaaaatcccgacttaaattctaaaatcgagaattttgcgactttcttcactttcaacgactgaaatccatagtagaatctcaaaatagg 23863354  T
Q  274 caaaatccatcgattttgattgcaattttacga 306  Q
    |||||||||||||||||| |||| |||||||||    
T  23863353 caaaatccatcgattttggttgcgattttacga 23863321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 181 - 309
Target Start/End: Original strand, 31578009 - 31578136
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| |||||||||||  ||||||  | ||||||||||||||||||||||||||||| | ||||||  | |||||||| |||||||||||||||    
T  31578009 ttgtcaaaatcccgacttaaatgttaaaatttaagattttgcgattttcttcaccttcaacgatttaaatcctag-tagaatcctaaaataagcaaaatc 31578107  T
Q  281 catcgattttgattgcaattttacgattt 309  Q
    |||| ||||||||||||||||||||||||    
T  31578108 catcaattttgattgcaattttacgattt 31578136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 175 - 310
Target Start/End: Original strand, 20063712 - 20063847
Alignment:
Q  175 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 274  Q
    ||||| |||||||||| |||||||||| ||||||||||| | ||||||| ||||||||| |||||| |||| ||||||||  ||||||||||||||| ||    
T  20063712 acattgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaataggc 20063811  T
Q  275 aaaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||| |||||||||| ||||| |||||||| ||||    
T  20063812 aaaattcatcgattttaattgcgattttacgttttc 20063847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 1404782 - 1404916
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| ||||||||||| |||||||  | ||||||| || |||||||||||||||||||| ||||||||  |||||||| ||| || |||    
T  1404782 cattgttgtcaaaatcccgacttaaattctaaaatttaggattttgtgactttcttcaccttcaacgacttaaatccattgtagaatcctaaactatgca 1404881  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||||  |||||||||||||    
T  1404882 aaatccatcgattttgattgtgattttacgatttc 1404916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 36429847 - 36429981
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| || |||||||||||| |||| | |||||||||| ||||||||||||||||||||||| | |||   |||||| ||||||| |||    
T  36429847 cattgttgtcaaaatcccaacttaaatcctataatctaggattttgcgactttcttcaccttcaacgactcaagttcataggagaatctcaaaataggca 36429946  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||||| ||| |||||||||    
T  36429947 aaatccatcgattttgattgcgattgtacgatttc 36429981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 181 - 356
Target Start/End: Original strand, 19491859 - 19492030
Alignment:
Q  181 ttgtcaaaattccgacttaaatccta--aaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaa 278  Q
    ||||||||||  ||| ||||||||||  ||||| | |||||||||| |||||||| ||| ||||||||||||||||   ||||||| |||||| | ||||    
T  19491859 ttgtcaaaatctcgaattaaatcctataaaatctaggattttgcgactttcttcatcttaaacgactcaaatccatagcagaatcc-aaaataggtaaaa 19491957  T
Q  279 tccatcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 356  Q
    |||||||||||||||||| ||||||     ||||||||||| |||| ||||||||||||||||||||| ||| |||||    
T  19491958 tccatcgattttgattgcgatttta-----tcatacaaaatcgcaggattttaaagggttttgaagaattttatccat 19492030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 182 - 313
Target Start/End: Complemental strand, 15588973 - 15588843
Alignment:
Q  182 tgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcc 281  Q
    ||||||||| ||||||||| || |||||| || |||||||||  |||||||||||||||| |||||||| |||  ||||||| |||||||  |||||||     
T  15588973 tgtcaaaatcccgacttaa-tcttaaaattcaggattttgcgtctttcttcaccttcaacaactcaaatacatagtagaatctcaaaatagacaaaatca 15588875  T
Q  282 atcgattttgattgcaattttacgatttcata 313  Q
    |||| |||| ||||| ||||||||||||||||    
T  15588874 atcgttttttattgcgattttacgatttcata 15588843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 283
Target Start/End: Complemental strand, 1690892 - 1690785
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| ||||||||| ||||||||||||| ||||||  | ||||||| || ||||||||||||| |||||||| ||||||  || |||||||||||| |||    
T  1690892 cattgttgtcaaaactccgacttaaatcttaaaatttaggattttgtgactttcttcaccttcgacgactcagatccatagtaaaatcccaaaataggca 1690793  T
Q  276 aaatccat 283  Q
    ||| ||||    
T  1690792 aaacccat 1690785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 17995054 - 17995128
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaat 250  Q
    |||| |||| |||||||||||||||| |||||||||||  ||||||||||||| |||||| ||||||||||||||    
T  17995054 cattgttgttaaaattccgacttaaaacctaaaatccagaattttgcgattttattcaccatcaacgactcaaat 17995128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 276
Target Start/End: Original strand, 16766714 - 16766809
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaa 276  Q
    |||||||||||  |||||||||| ||||||  | |||||| ||||||| |||||||||||||| ||||||||||   ||||||| |||||||||||    
T  16766714 ttgtcaaaattttgacttaaatcttaaaatttaggattttacgattttattcaccttcaacgaatcaaatccatagcagaatcctaaaataagcaa 16766809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 15627653 - 15627715
Alignment:
Q  175 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcacctt 237  Q
    |||||||||||||||| |||||||||||||||||||  ||||||||| | |||| ||||||||    
T  15627653 acattattgtcaaaatcccgacttaaatcctaaaatttatgattttgtggttttattcacctt 15627715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 280
Target Start/End: Complemental strand, 5395778 - 5395674
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||||  ||| |||||| ||||||  | |||||||||| ||| |||| ||| || |||||||||||||   |||||| ||||||| |||    
T  5395778 cattgttgtcaaaattttgacctaaatcataaaatataggattttgcgactttattcatcttaaatgactcaaatccatagcagaatctcaaaataggca 5395679  T
Q  276 aaatc 280  Q
    |||||    
T  5395678 aaatc 5395674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 279
Target Start/End: Original strand, 31023261 - 31023325
Alignment:
Q  215 gattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 279  Q
    |||||||||| ||| ||||| ||||||||||||||| |||  |||||||| |||||| |||||||    
T  31023261 gattttgcgactttattcactttcaacgactcaaattcatagtagaatcctaaaataggcaaaat 31023325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 310
Target Start/End: Complemental strand, 13502601 - 13502566
Alignment:
Q  275 aaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||||||||| |||||||||||||    
T  13502601 aaaatccatcgattttgattgcgattttacgatttc 13502566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 310
Target Start/End: Original strand, 1404985 - 1405019
Alignment:
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||||||||||||| |||||    
T  1404985 aaatccatcgattttgattgcaattttacaatttc 1405019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 1690774 - 1690724
Alignment:
Q  260 aatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||| || ||| |||| |||||||||||| |||||||||||||    
T  1690774 aatcccaaaataggcgaaacccattgattttgattgcgattttacgatttc 1690724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 282
Target Start/End: Original strand, 15266081 - 15266187
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| ||||||||||   || |||||||||||||| || |||||||  | ||| |||| |||||| || ||||||||||| || ||| |||||||| | |    
T  15266081 cattgttgtcaaaatcatgatttaaatcctaaaattcaggattttgtaactttattcatcttcaatgattcaaatccatgttataattccaaaataggaa 15266180  T
Q  276 aaatcca 282  Q
    |||||||    
T  15266181 aaatcca 15266187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 27406782 - 27406851
Alignment:
Q  182 tgtcaaaattccgacttaaatcctaaaatccat--gattttgcgattttcttcaccttcaacgactcaaa 249  Q
    ||||||||| |||| |||||| ||||||||  |  |||||||||||||| || |||||||||||||||||    
T  27406782 tgtcaaaatcccgaattaaattctaaaatctctaggattttgcgattttttttaccttcaacgactcaaa 27406851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 264
Target Start/End: Complemental strand, 27750283 - 27750194
Alignment:
Q  175 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcga-ttttcttcaccttcaacgactcaaatccatgatagaatcc 264  Q
    ||||| ||||||||||  |||||||| ||| ||||| || |||||||||| ||||||| || || |||||||||||||||| | |||||||    
T  27750283 acattgttgtcaaaatcgcgacttaagtcccaaaatacaagattttgcgacttttcttaac-ttaaacgactcaaatccataacagaatcc 27750194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 31237904 - 31237870
Alignment:
Q  275 aaaatccatcgattttgattgcaattttacgattt 309  Q
    |||||||||||||||||||||||||||||| ||||    
T  31237904 aaaatccatcgattttgattgcaattttacaattt 31237870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 193 - 281
Target Start/End: Complemental strand, 13503156 - 13503067
Alignment:
Q  193 cgacttaaatcctaaaa-tccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcc 281  Q
    ||||||||||| ||||| || | ||||||||||| || ||||| ||||||| ||||||||||| | | ||| | |||||| |||||||||    
T  13503156 cgacttaaatcttaaaaatctaggattttgcgatcttattcactttcaacggctcaaatccataacaaaattctaaaataggcaaaatcc 13503067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 280
Target Start/End: Original strand, 34841594 - 34841659
Alignment:
Q  215 gattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||| ||||| ||| |||||||||||||||||||||||||   ||||| |||||| | ||||||||    
T  34841594 gattctgcgactttattcaccttcaacgactcaaatccataggagaataccaaaacatgcaaaatc 34841659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 221
Target Start/End: Original strand, 29660897 - 29660937
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttg 221  Q
    ||||||||| ||||||||||||||||||||| | |||||||    
T  29660897 ttgtcaaaaatccgacttaaatcctaaaatctaggattttg 29660937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 34841784 - 34841816
Alignment:
Q  277 aatccatcgattttgattgcaattttacgattt 309  Q
    |||||||||||||||||||| ||||||||||||    
T  34841784 aatccatcgattttgattgcgattttacgattt 34841816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 275 - 303
Target Start/End: Original strand, 36430049 - 36430077
Alignment:
Q  275 aaaatccatcgattttgattgcaatttta 303  Q
    |||||||||||||||||||||||||||||    
T  36430049 aaaatccatcgattttgattgcaatttta 36430077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 8e-49; HSPs: 28)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 183 - 353
Target Start/End: Complemental strand, 17056122 - 17055952
Alignment:
Q  183 gtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcca 282  Q
    |||||||| | || ||||||||||||||||| |||||||| ||||||| |||||||||||||||| ||||||  ||||||   |||||||| ||||||||    
T  17056122 gtcaaaatcctgatttaaatcctaaaatccaggattttgcaattttctccaccttcaacgactcagatccatagtagaattttaaaataagtaaaatcca 17056023  T
Q  283 tcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtc 353  Q
    |||||||||||||| |||||||||||||||||||||| |||  ||||||||||||||||||||| ||||||    
T  17056022 tcgattttgattgcgattttacgatttcatacaaaatcgcaagattttaaagggttttgaagaattttgtc 17055952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 9955165 - 9955031
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| || ||||||||||||||||  | |||||||||| |||||||||||||||||||| |||||||   |||||||||||||||||||    
T  9955165 cattgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgacttaaatccaatgtagaatcccaaaataagca 9955066  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||||| |||||||||||||    
T  9955065 aaatccatcgattttgattgcgattttacgatttc 9955031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 12513285 - 12513414
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| ||||||||||||||| |||| | |||||||||| |||||||| ||||||||||||||||||||  || ||||  ||||||| |||||||    
T  12513285 ttgtcaaaatcccgacttaaatcctacaatctaggattttgcgactttcttcagcttcaacgactcaaatccatagtaaaatcataaaataatcaaaatc 12513384  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||| |||||||||||||    
T  12513385 catcgattttgattgcgattttacgatttc 12513414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 176 - 303
Target Start/End: Complemental strand, 21846398 - 21846271
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| |||| ||||||||||||||||| |||||||||| ||| |||||||||||||||||||||||||  ||||||| |||||||   |    
T  21846398 cattgttgtcaaaatcccgagttaaatcctaaaatccaggattttgcgacttttttcaccttcaacgactcaaatccatagtagaatctcaaaatagaaa 21846299  T
Q  276 aaatccatcgattttgattgcaatttta 303  Q
    ||||||||||||||||||||| ||||||    
T  21846298 aaatccatcgattttgattgcgatttta 21846271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 13100190 - 13100324
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    ||||||||||||||| || |||||||| |||||||| | |||||| ||| ||||||||| |||||||||||||||||||  |||||||| |||||| |||    
T  13100190 cattattgtcaaaatcccaacttaaattctaaaatcgaggattttacgactttcttcacgttcaacgactcaaatccatagtagaatcctaaaataggca 13100289  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||| ||||||||||||||||| ||||||| |||||    
T  13100290 aaaaccatcgattttgattgcgattttacaatttc 13100324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 41032800 - 41032666
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| ||||||||||  ||||||||||| || ||| || ||||||||||||||||||||||||||||||||||||||||  |||||| | |||||| |||    
T  41032800 cattgttgtcaaaatctcgacttaaatcgtagaattcaggattttgcgattttcttcaccttcaacgactcaaatccatagtagaattctaaaataggca 41032701  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||| ||||| ||||||| |||||    
T  41032700 aaatccatcgattttaattgcgattttacaatttc 41032666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 13276391 - 13276262
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| |||| ||||||||||||||| | |||||||||| |||||||| ||||||||||  ||||||||  |||||||| |||||| ||||||||    
T  13276391 ttgtcaaaatcccgatttaaatcctaaaatctaggattttgcgactttcttcatcttcaacgacctaaatccatagtagaatcctaaaataggcaaaatc 13276292  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
     ||||||||||||||| |||||||||||||    
T  13276291 aatcgattttgattgcgattttacgatttc 13276262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 19010071 - 19009942
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| | ||||||||||||||||| || |||||||||| ||| ||||||||||| |||| ||||||||  || ||| | |||||||||||||||    
T  19010071 ttgtcaaaatccggacttaaatcctaaaattcaggattttgcgacttttttcaccttcaatgacttaaatccatagtaaaattctaaaataagcaaaatc 19009972  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||| |||||||||||||    
T  19009971 catcgattttgattgcgattttacgatttc 19009942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 23528660 - 23528789
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| || ||||||||| |||||| || |||||||||| |||||||| ||||||||||||||||||||  |||||||| |||||| ||||||||    
T  23528660 ttgtcaaaatcccaacttaaatcttaaaattcaggattttgcgactttcttcatcttcaacgactcaaatccatagtagaatcctaaaataggcaaaatc 23528759  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
     ||||||||||| ||| |||||||||||||    
T  23528760 tatcgattttgaatgcgattttacgatttc 23528789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 9352193 - 9352059
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| |||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||| ||   ||| ||||||||||  ||    
T  9352193 cattgttgtcaaaatcccgacttaaatcctaaaatccagggttttgcgactttcttcaccttcaaagactcaaatctatagcagagtcccaaaatagaca 9352094  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||| |||||||||||||| |||||| ||||||    
T  9352093 aaatccgtcgattttgattgcgattttatgatttc 9352059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 9327345 - 9327211
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||| ||||| | |||||||||||||||||  | | |||||||| ||||| |||||||||||||||||||| ||  || ||||||||||||  ||    
T  9327345 cattgttgttaaaatcctgacttaaatcctaaaatttagggttttgcgactttctacaccttcaacgactcaaatctatagtaaaatcccaaaatagaca 9327246  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||||| |||||||||||||    
T  9327245 aaatccatcgattttgattgcgattttacgatttc 9327211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 18304941 - 18304807
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttc-aacgactcaaatccatgatagaatcccaaaataagc 274  Q
    |||| |||||||||| || |||||||||||||||||||  ||||||||| ||||||||||||| |||||||||||| |||  ||||||| |||||||  |    
T  18304941 cattgttgtcaaaatcccaacttaaatcctaaaatccagtattttgcgactttcttcaccttcaaacgactcaaattcatagtagaatctcaaaatagac 18304842  T
Q  275 aaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||| ||||||||||| | |||||||||||    
T  18304841 aaaatccatcaattttgattgcga-tttacgatttc 18304807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 30619079 - 30619150
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcc 252  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  30619079 ttgtcaaaatcccgacttaaatcctaaaatccaggattttgcgattttcttcaccttcaacgactcaaatcc 30619150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 42180190 - 42180061
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| || |||||||| ||||||| || |||||||||| ||||||| |||||||||| ||||||||||  ||||||  ||||||| |||||||     
T  42180190 ttgtcaaaatcccaacttaaattctaaaattcaggattttgcgactttcttccccttcaacgagtcaaatccatagtagaatttcaaaataggcaaaata 42180091  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||  ||| |||||||||    
T  42180090 catcgattttgattgtgattctacgatttc 42180061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 175 - 310
Target Start/End: Complemental strand, 25146899 - 25146765
Alignment:
Q  175 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 274  Q
    ||||| |||||||||| | ||||||||||||||||| ||  ||||||||| ||||||||||||||||||||||||| |||  |||||||||||||||  |    
T  25146899 acattgttgtcaaaatcctgacttaaatcctaaaattcagaattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaatagac 25146800  T
Q  275 aaaatccatcgattttgattgcaattttacgatttc 310  Q
    ||| | |||| ||||| ||||| | |||||||||||    
T  25146799 aaagtacatcaattttaattgcga-tttacgatttc 25146765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 176 - 309
Target Start/End: Complemental strand, 16125588 - 16125452
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttctt---caccttcaacgactcaaatccatgatagaatcccaaaataa 272  Q
    ||||||| ||||||| | ||||||||||||||||| || |||||||||| ||||||   |||||||||||||  ||||||||  || ||||  ||||||     
T  16125588 cattattttcaaaatcctgacttaaatcctaaaattcaggattttgcgactttctttttcaccttcaacgacctaaatccatagtaaaatcttaaaatag 16125489  T
Q  273 gcaaaatccatcgattttgattgcaattttacgattt 309  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  16125488 gcaaaatccattgattttgattgcgattttacgattt 16125452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 215 - 310
Target Start/End: Complemental strand, 17869841 - 17869746
Alignment:
Q  215 gattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||| ||||||||||||| |||||  |||||||   |||||||| |||||| ||||||| | ||||||||||||||||||||||||||||    
T  17869841 gattttgcgactttcttcaccttcgacgacctaaatccacagtagaatcctaaaataggcaaaattcttcgattttgattgcaattttacgatttc 17869746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 281
Target Start/End: Complemental strand, 18337651 - 18337547
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| |||||||| | ||||||||||| |||||||| | ||| |||||||||||||||||||||||||   |||| ||||||||| |||    
T  18337651 cattgttgtcaaaatcccgacttata-cctaaaatccaggattttgcaactttattcaccttcaacgactcaaatccatagcagaaccccaaaataggca 18337553  T
Q  276 aaatcc 281  Q
    ||||||    
T  18337552 aaatcc 18337547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 193 - 310
Target Start/End: Complemental strand, 9128953 - 9128836
Alignment:
Q  193 cgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttga 292  Q
    |||||||||||||||||   | ||| |||||| ||||||||| || ||||||||||||  ||  |||||||  ||||||  |||||| ||||||||||||    
T  9128953 cgacttaaatcctaaaaattaggatcttgcgactttcttcacatttaacgactcaaatttatagtagaatcttaaaatagacaaaattcatcgattttga 9128854  T
Q  293 ttgcaattttacgatttc 310  Q
    |||| |||| ||||||||    
T  9128853 ttgcgatttgacgatttc 9128836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 253
Target Start/End: Complemental strand, 14074495 - 14074423
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcca 253  Q
    |||||||||| ||| |||||||||||||||  | |||||||||| ||||||||  ||||||||||||||||||    
T  14074495 ttgtcaaaatcccgtcttaaatcctaaaatgtaggattttgcgactttcttcatgttcaacgactcaaatcca 14074423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 181 - 281
Target Start/End: Complemental strand, 27917577 - 27917477
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| ||||||||||| || ||||| | |||||||||||||| || ||||||||| || ||||| |||   |||||| ||| ||||||||||||    
T  27917577 ttgtcaaaatcccgacttaaattctgaaatctaggattttgcgattttatttaccttcaacaacccaaattcatagcagaatcacaagataagcaaaatc 27917478  T
Q  281 c 281  Q
    |    
T  27917477 c 27917477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 242
Target Start/End: Original strand, 18228230 - 18228277
Alignment:
Q  195 acttaaatcctaaaatccatgattttgcgattttcttcaccttcaacg 242  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||    
T  18228230 acttaaatcctaaaatccaagattttacgattttcatcaccttcaacg 18228277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 251
Target Start/End: Complemental strand, 12800706 - 12800636
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatc 251  Q
    |||| ||||| || ||||||||||||||||  | |||||| ||| ||||||||| ||||||||||||||||    
T  12800706 ttgtgaaaatcccaacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatc 12800636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 24117006 - 24117111
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| ||||||||||||| | |||||| |||||||  | |||||| | | ||| |||||||||||||| ||||||  ||  ||||||||||||| || ||    
T  24117006 cattgttgtcaaaattccaatttaaattctaaaatttaagattttacaactttattcaccttcaacgattcaaatttatattagaatcccaaaacaaaca 24117105  T
Q  276 aaatcc 281  Q
    ||||||    
T  24117106 aaatcc 24117111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 266 - 310
Target Start/End: Original strand, 32881416 - 32881460
Alignment:
Q  266 aaaataagcaaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||| ||||||| |||||||||||||||| |||||||||||||    
T  32881416 aaaataggcaaaattcatcgattttgattgcgattttacgatttc 32881460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 309
Target Start/End: Original strand, 16434775 - 16434809
Alignment:
Q  275 aaaatccatcgattttgattgcaattttacgattt 309  Q
    ||||||| |||||||||||||||||||||||||||    
T  16434775 aaaatccttcgattttgattgcaattttacgattt 16434809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 295
Target Start/End: Original strand, 18228281 - 18228319
Alignment:
Q  257 tagaatcccaaaataagcaaaatccatcgattttgattg 295  Q
    ||||||||||||||| |||||||||||| ||||||||||    
T  18228281 tagaatcccaaaataggcaaaatccatcaattttgattg 18228319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 276 - 310
Target Start/End: Original strand, 47785958 - 47785992
Alignment:
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||| ||||||||||||||||||||||||    
T  47785958 aaatccatcggttttgattgcaattttacgatttc 47785992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0186 (Bit Score: 91; Significance: 5e-44; HSPs: 1)
Name: scaffold0186
Description:

Target: scaffold0186; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 8442 - 8576
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| || ||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||  |||||||||||||||||||    
T  8442 cattgttgtcaaaatccctacttaaatcctaaaatccacgattttgcgactttcttcaccttcaacgacttaaatctattgtagaatcccaaaataagca 8541  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||| |||||||||||| |||||||||||||    
T  8542 aaatccattgattttgattgcgattttacgatttc 8576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 89; Significance: 8e-43; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 174 - 310
Target Start/End: Complemental strand, 30912544 - 30912408
Alignment:
Q  174 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 273  Q
    |||||| |||||||||| || ||||||||||||||||  | |||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||| |    
T  30912544 tacattgttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccataatagaatcacaaaatagg 30912445  T
Q  274 caaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||| |||||||||||| |||||||||||||    
T  30912444 caaaatccatagattttgattgcgattttacgatttc 30912408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 26053421 - 26053292
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| |||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  26053421 ttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaataagcaaaatc 26053322  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||| ||||||||||  |||||||||||||    
T  26053321 catcaattttgattgtcattttacgatttc 26053292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 26073474 - 26073345
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| |||||||||||| ||||||| | |||||||||| ||||||||||||||| ||||||||| ||| |||||||||||||||||||||||||    
T  26073474 ttgtcaaaatcccgacttaaatcttaaaatctaggattttgcgactttcttcaccttcaatgactcaaattcataatagaatcccaaaataagcaaaatc 26073375  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||| ||||||||||  |||||||||||||    
T  26073374 catcaattttgattgtcattttacgatttc 26073345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 27233407 - 27233273
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||| | |||||||||||||||||||||| ||||||| || |||||||||||||||||||| ||||||||  |||||||||||||||  ||    
T  27233407 cattgttgtcaaactaccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttaaatccatagtagaatcccaaaatagaca 27233308  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||||| |||||| ||||||    
T  27233307 aaatccatcgattttgattgcgattttatgatttc 27233273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 17250061 - 17250190
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||| ||||| |||||||||||||||||||||| |||||||| | |||||||||||||||||||| ||||||||  ||||||||||||||| |||||||     
T  17250061 ttgttaaaatcccgacttaaatcctaaaatccaggattttgcaactttcttcaccttcaacgacttaaatccatactagaatcccaaaataggcaaaatt 17250160  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    ||| |||||||||||| |||||||||||||    
T  17250161 cattgattttgattgcgattttacgatttc 17250190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 302
Target Start/End: Complemental strand, 6943590 - 6943464
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| ||||||||||||||||||| || |||||||||| |||||||||||||||||||||||||| ||  ||||||| |||||||  ||    
T  6943590 cattgttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatcgatagtagaatctcaaaatagaca 6943491  T
Q  276 aaatccatcgattttgattgcaatttt 302  Q
    |||| |||||||||||||||| |||||    
T  6943490 aaattcatcgattttgattgcgatttt 6943464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 175 - 310
Target Start/End: Complemental strand, 11327702 - 11327567
Alignment:
Q  175 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 274  Q
    ||||| |||||||||| |||||||||| ||||||||||| | ||||||| ||||||||| |||||| |||| ||||||||  ||||||||||||||| ||    
T  11327702 acattgttgtcaaaatcccgacttaaaacctaaaatccaaggttttgcggttttcttcatcttcaaggacttaaatccatagtagaatcccaaaataggc 11327603  T
Q  275 aaaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||| |||||||||| ||||| |||||||| ||||    
T  11327602 aaaattcatcgattttaattgcgattttacgttttc 11327567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 17543870 - 17543736
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| ||||||||||  |||||||||||||||||| || |||||||||| ||| ||||| |||||||||||||||||||  |||||||  ||||||||||    
T  17543870 cattgttgtcaaaatctcgacttaaatcctaaaattcaggattttgcgacttttttcactttcaacgactcaaatccatagtagaatcttaaaataagca 17543771  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||| || |||||||||||| ||||||| |||||    
T  17543770 aaatctatggattttgattgcgattttactatttc 17543736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 192 - 310
Target Start/End: Original strand, 23897826 - 23897944
Alignment:
Q  192 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttg 291  Q
    ||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||||||||  || ||| | |||||| || ||||||||||||||||    
T  23897826 ccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccatagtaaaattctaaaataggcgaaatccatcgattttg 23897925  T
Q  292 attgcaattttacgatttc 310  Q
    ||||| |||||||||||||    
T  23897926 attgcgattttacgatttc 23897944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 15528235 - 15528106
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| ||||||||||||||||||| || |||||||||| |||||||||||| ||||||| |||| |||  |||||||  ||||||  |||||||    
T  15528235 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcacctttaacgacttaaattcatagtagaatcttaaaatagacaaaatc 15528136  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    ||||||||| |||||| |||||||||||||    
T  15528135 catcgatttcgattgcgattttacgatttc 15528106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 185 - 310
Target Start/End: Complemental strand, 22499006 - 22498881
Alignment:
Q  185 caaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatc 284  Q
    |||||| || ||| |||||||||| ||||  ||||||||| |||||||||||| ||||||||||||||||  || |||| |||||||  |||||||||||    
T  22499006 caaaatcccaactaaaatcctaaattccacaattttgcgactttcttcaccttgaacgactcaaatccatagtacaatctcaaaatagacaaaatccatc 22498907  T
Q  285 gattttgattgcaattttacgatttc 310  Q
    |||||| |||||||||||||||||||    
T  22498906 gattttaattgcaattttacgatttc 22498881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 7223518 - 7223645
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| |||||||||||||||||||  | |||||||||| |||||||||||       || ||||||||  |||||| ||||||||||||    
T  7223518 cattgttgtcaaaatcccgacttaaatcctaaaatttaggattttgcgactttcttcacct-------cttaaatccatagtagaattccaaaataagca 7223610  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||||| |||||||||||||    
T  7223611 aaatccatcgattttgattgcgattttacgatttc 7223645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 309
Target Start/End: Complemental strand, 7918506 - 7918378
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| ||||||||||| ||||||| || |||||||||| ||| |||||||||||||||| ||||||||  || ||||| || ||||||||||||    
T  7918506 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttttttcaccttcaacgacttaaatccatagtaaaatcctaacataagcaaaatc 7918407  T
Q  281 catcgattttgattgcaattttacgattt 309  Q
     ||||||||||||||  ||||| ||||||    
T  7918406 aatcgattttgattgggattttgcgattt 7918378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 184 - 310
Target Start/End: Original strand, 19748340 - 19748466
Alignment:
Q  184 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccat 283  Q
    ||||||| |||||||||||| || |||||| ||||||| ||||||||||||||| || ||||||||||| |  |||||||  |||||| ||||||| |||    
T  19748340 tcaaaatcccgacttaaatcttacaatccaggattttgagattttcttcacctttaatgactcaaatccgtagtagaatcttaaaataggcaaaattcat 19748439  T
Q  284 cgattttgattgcaattttacgatttc 310  Q
    ||||||||||||  |||||||||||||    
T  19748440 cgattttgattgtgattttacgatttc 19748466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 181 - 309
Target Start/End: Complemental strand, 2912372 - 2912245
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| |||||||||||| ||||||  | |||||||| | ||||| || ||||||||| ||||||| ||  |||||||  ||||||||||||||     
T  2912372 ttgtcaaaatcccgacttaaatcttaaaatttaggattttgcaactttctccatcttcaacgattcaaatc-atagtagaatcttaaaataagcaaaatt 2912274  T
Q  281 catcgattttgattgcaattttacgattt 309  Q
    |||||||||||||||||||||||||||||    
T  2912273 catcgattttgattgcaattttacgattt 2912245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 176 - 306
Target Start/End: Complemental strand, 10509153 - 10509023
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    ||||||||||||||| | ||||||||||||||||| ||  | |||| || ||||||||| ||||| |||||||||  ||  ||||||||||||||| |||    
T  10509153 cattattgtcaaaatccagacttaaatcctaaaattcagaaatttgtgactttcttcacattcaatgactcaaatttatagtagaatcccaaaataggca 10509054  T
Q  276 aaatccatcgattttgattgcaattttacga 306  Q
    |||| |||||||||||||| | |||||||||    
T  10509053 aaattcatcgattttgattacgattttacga 10509023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 17103201 - 17103328
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| |||||||||||| |||||| || ||||||||||       ||| ||||||||||||||| |||  |||||||||||||||  ||    
T  17103201 cattgttgtcaaaatcccgacttaaatcttaaaattcaggattttgcga-------cactttcaacgactcaaatgcatagtagaatcccaaaatagaca 17103293  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||| | |||||||||||||    
T  17103294 aaatccatcgattttgattacgattttacgatttc 17103328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 226 - 310
Target Start/End: Original strand, 21354789 - 21354873
Alignment:
Q  226 tttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||| ||||||||||||| ||||||||| |||||||||||||||  |||||||||||| |||| ||||| |||||||||||||    
T  21354789 tttctttaccttcaacgacttaaatccatggtagaatcccaaaatagacaaaatccatcgttttttattgcgattttacgatttc 21354873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 184 - 254
Target Start/End: Complemental strand, 3574054 - 3573984
Alignment:
Q  184 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 254  Q
    ||||||||||||||||||| ||||||||||  |||| |||| |||||||||||||||||||||||||||||    
T  3574054 tcaaaattccgacttaaattctaaaatccagaatttcgcgactttcttcaccttcaacgactcaaatccat 3573984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 5422878 - 5422803
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatc 251  Q
    |||| |||||||||| ||||||||||| ||||||| ||||||||||| | ||| ||||||||||||||||||||||    
T  5422878 cattgttgtcaaaatcccgacttaaatactaaaattcatgattttgcaactttattcaccttcaacgactcaaatc 5422803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 269
Target Start/End: Complemental strand, 18491161 - 18491074
Alignment:
Q  182 tgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaa 269  Q
    ||||||||| ||||||||||||||||||||||  |||||||   ||| |||||||||||||||||||||||||   ||||||||||||    
T  18491161 tgtcaaaatcccgacttaaatcctaaaatccagaattttgcatctttattcaccttcaacgactcaaatccatagcagaatcccaaaa 18491074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 279
Target Start/End: Complemental strand, 4842010 - 4841946
Alignment:
Q  215 gattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 279  Q
    |||||||||| ||| ||||||||||||||||||||||| |   ||||||||| |||| |||||||    
T  4842010 gattttgcgactttattcaccttcaacgactcaaatccgtagcagaatcccataataggcaaaat 4841946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 356
Target Start/End: Complemental strand, 3573979 - 3573921
Alignment:
Q  298 attttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 356  Q
    |||||| ||||||| |||||||||||  || |||||||||||||||||| ||| |||||    
T  3573979 attttaagatttcaaacaaaattgcatgatgttaaagggttttgaagaattttttccat 3573921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 193 - 253
Target Start/End: Complemental strand, 8285836 - 8285776
Alignment:
Q  193 cgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcca 253  Q
    |||||||| |||||||||||| |||||||||| ||  |  | |||||||||||||||||||    
T  8285836 cgacttaagtcctaaaatccaggattttgcgacttgatctagcttcaacgactcaaatcca 8285776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 87; Significance: 1e-41; HSPs: 35)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 26281439 - 26281306
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| ||||||||||||||||||||||| |||||| || |||||||||| |||||||||||||||||||||||||||||  |||||| ||||||||||||    
T  26281439 cattgttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaatccattgtagaattccaaaataagca 26281340  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||| |||| |||| ||||||||    
T  26281339 aaatccatcgattttg-ttgcgatttaacgatttc 26281306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 181 - 317
Target Start/End: Complemental strand, 22687789 - 22687653
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| ||||||||||||||||||| || || ||||||| |||||||| ||||||| ||||||||||||   |||||||||||||| ||||||||    
T  22687789 ttgtcaaaatcccgacttaaatcctaaaattcaggaatttgcgactttcttcaacttcaacaactcaaatccatcgcagaatcccaaaataggcaaaatc 22687690  T
Q  281 catcgattttgattgcaattttacgatttcatacaaa 317  Q
    |||||||||||||||| ||||||||||||| ||||||    
T  22687689 catcgattttgattgcgattttacgatttcttacaaa 22687653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 35 - 144
Target Start/End: Complemental strand, 7726127 - 7726020
Alignment:
Q  35 aaaattgtatttaggttgctgaatttgttcaggaaactcactttaccgtttgagatggaattatatgattcatgttggatttactccataagttgcgcat 134  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |||||||  ||||    
T  7726127 aaaattgaatttaggttgctgaatttgttcaggaaactcactttaccgtttgagatagaattacatgattcatgttggatttactctataagtt--gcat 7726030  T
Q  135 ttccaatata 144  Q
    ||||||||||    
T  7726029 ttccaatata 7726020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 24990196 - 24990067
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||||||||||||||||| |||||  | ||||||| || |||||| |||| |||||||||||||||||  |||||||| |||||| ||||||||    
T  24990196 ttgtcaaaattccgacttaaatccaaaaatttaggattttgtgactttctttacctccaacgactcaaatccatagtagaatcctaaaataggcaaaatc 24990097  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||||||||||||||    
T  24990096 catcgattttgattgcaattttacgatttc 24990067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 24725607 - 24725473
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| | |||||||||||||||||||| |||||| ||| |||||||||||||||| ||||||||||||  ||||||| ||||||| |||    
T  24725607 cattgttgtcaaaatccagacttaaatcctaaaatccaagattttacgactttcttcaccttcaacaactcaaatccatagtagaatcgcaaaataggca 24725508  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||| ||||||||| | |||| ||||||||    
T  24725507 aaatccatcaattttgattacgatttgacgatttc 24725473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 5058533 - 5058662
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| ||||||||||||||||||| ||  |||||||||||||||||||||||||||||  ||||||||  |||||||  |||||| ||||||||    
T  5058533 ttgtcaaaatcccgacttaaatcctaaaattcagaattttgcgattttcttcaccttcaacgacctaaatccatagtagaatcttaaaataggcaaaatc 5058632  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |  ||||||||||||| |||||||||||||    
T  5058633 ctacgattttgattgcgattttacgatttc 5058662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 198 - 310
Target Start/End: Complemental strand, 8343908 - 8343796
Alignment:
Q  198 taaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgca 297  Q
    |||||||||||||||  |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||| | |||||||||| ||||| |||||     
T  8343908 taaatcctaaaatcctggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatatgaaaaatccatcaattttaattgcg 8343809  T
Q  298 attttacgatttc 310  Q
    |||||||||||||    
T  8343808 attttacgatttc 8343796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 186 - 310
Target Start/End: Original strand, 11324988 - 11325111
Alignment:
Q  186 aaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcg 285  Q
    ||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||| | |||||| ||||||| |||      
T  11324988 aaaatcccgacttaaatcctaaaattcatgattttgggattttcttcaccttcaacgactcaaatccataatagaattctaaaataggcaaaattcat-a 11325086  T
Q  286 attttgattgcaattttacgatttc 310  Q
    ||||||||||| | |||||||||||    
T  11325087 attttgattgcgaatttacgatttc 11325111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 175 - 310
Target Start/End: Original strand, 39182258 - 39182392
Alignment:
Q  175 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 274  Q
    ||||| ||| |||||| | |||||||||||||||||| | |||||||||| || ||||||||||||||||| ||||||||  ||||||||||||||| ||    
T  39182258 acattgttgacaaaatcctgacttaaatcctaaaatctaggattttgcgactt-cttcaccttcaacgactgaaatccatagtagaatcccaaaataggc 39182356  T
Q  275 aaaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||| |||| ||||||| |||||    
T  39182357 aaaatccatcgattttggttgcgattttacaatttc 39182392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 176 - 306
Target Start/End: Original strand, 14055250 - 14055380
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||| ||||| || ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| ||  |||||| | |||||| |||    
T  14055250 cattgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaataggca 14055349  T
Q  276 aaatccatcgattttgattgcaattttacga 306  Q
    |||||||| |||||||||||| |||||||||    
T  14055350 aaatccatagattttgattgcgattttacga 14055380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 176 - 306
Target Start/End: Original strand, 14365278 - 14365408
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||| ||||| || ||||| ||||||||||||| |||||||||| |||||||||||||||||||||||||| ||  |||||| | |||||| |||    
T  14365278 cattgttgtgaaaatccccacttatatcctaaaatccaagattttgcgactttcttcaccttcaacgactcaaatctatagtagaattctaaaataggca 14365377  T
Q  276 aaatccatcgattttgattgcaattttacga 306  Q
    |||||||| |||||||||||| |||||||||    
T  14365378 aaatccatagattttgattgcgattttacga 14365408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 176 - 309
Target Start/End: Complemental strand, 8330175 - 8330042
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| | ||| ||||| ||||||| ||||||||||||| |||||||||||||||||| ||||||||||  ||||||||||||||| | |    
T  8330175 cattgttgtcaaaatcctgacctaaattctaaaattcatgattttgcgactttcttcaccttcaacgattcaaatccatagtagaatcccaaaataggaa 8330076  T
Q  276 aaatccatcgattttgattgcaattttacgattt 309  Q
    |||| ||| |||||| ||||| ||||||||||||    
T  8330075 aaattcattgattttaattgcgattttacgattt 8330042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 8346658 - 8346529
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| | ||| |||||  ||||||  | |||||||||| |||||||||||||||||||||||||||||  ||||||||||||||| | ||||||    
T  8346658 ttgtcaaaatcctgacctaaatattaaaatttaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaataggaaaaatc 8346559  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||||||||| ||||| |||||||||||||    
T  8346558 catcgattttaattgcgattttacgatttc 8346529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 175 - 310
Target Start/End: Complemental strand, 7730473 - 7730339
Alignment:
Q  175 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc 274  Q
    ||||| |||||||||| | |||||||||||||||||||| | |||||||| |||||||||||| ||| |||||||||||   |||||| |||||||| |     
T  7730473 acattgttgtcaaaatcctgacttaaatcctaaaatccagg-ttttgcgactttcttcacctttaacaactcaaatccacagtagaattccaaaatagga 7730375  T
Q  275 aaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||||||||  |||||||||||||    
T  7730374 aaaatccatcgattttgattgagattttacgatttc 7730339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 27221417 - 27221551
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||| ||||| || |||||||| ||||||| || |||||||||| |||||||| |||||||||||||||| |||  |||||||  |||||  |||    
T  27221417 cattgttgttaaaatcccaacttaaattctaaaattcaggattttgcgactttcttcatcttcaacgactcaaatacatagtagaatcttaaaattggca 27221516  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||||| |||||||||||||    
T  27221517 aaatccatcgattttgattgcgattttacgatttc 27221551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 5715294 - 5715422
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| ||||||||||||||||||| || |||||||||| ||| | |||||||||| ||| |||| |||  |||||| ||||||||||||||||     
T  5715294 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgacttt-tacaccttcaacaacttaaattcatagtagaattccaaaataagcaaaatt 5715392  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||  |||||||||||||    
T  5715393 catcgattttgattgtgattttacgatttc 5715422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 184 - 301
Target Start/End: Original strand, 8571250 - 8571367
Alignment:
Q  184 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccat 283  Q
    ||||||| |||||||||||| ||||||||| |||||||||| |||||||||||| ||||||||||||||||  |||||||| ||||||   |||| ||||    
T  8571250 tcaaaatcccgacttaaatcataaaatccaggattttgcgactttcttcacctttaacgactcaaatccatagtagaatcctaaaatagagaaaaaccat 8571349  T
Q  284 cgattttgattgcaattt 301  Q
    ||||||||||||| ||||    
T  8571350 cgattttgattgcgattt 8571367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 11326390 - 11326519
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| || ||||||||||||||||  | |||||||||| |||||||||||||| ||||| ||||||||  |||||||  |||||| ||||||||    
T  11326390 ttgtcaaaatcccaacttaaatcctaaaatttaggattttgcgactttcttcaccttcagcgactaaaatccatagtagaatcttaaaataggcaaaatc 11326489  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
     ||||||||||||||| ||||||| |||||    
T  11326490 tatcgattttgattgcgattttacaatttc 11326519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 44944974 - 44944841
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcac----cttcaacgactcaaatccatgatagaatcccaaaataagcaa 276  Q
    |||||||||| ||||||||||||||||||| || |||||||||| |||||||||    ||||||||| ||||||||||  |||||||| ||||||  |||    
T  44944974 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttcttcactcaccttcaacgattcaaatccatagtagaatcctaaaatagtcaa 44944875  T
Q  277 aatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||||||  ||||||| |||||    
T  44944874 aatccatcgattttgattgggattttactatttc 44944841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 7736518 - 7736370
Alignment:
Q  1 tttttgtttccaatttctctattannnnnnnggaaaaattgtatttaggttgctgaatttgttcaggaaactcactttaccgtttgagatggaattatat 100  Q
    ||||||||||||||||||||||||       | | |||||| ||||||||| ||||||||| |||||||||| ||||||||||||||||   ||| ||||    
T  7736518 tttttgtttccaatttctctattacgtgtttgcacaaattgaatttaggttactgaatttgatcaggaaacttactttaccgtttgagaaataatcatat 7736419  T
Q  101 gattcatgttggatttactccataagttgcgcatttccaatatatgcatat 151  Q
    |||||  ||||||||||||| ||||||  | ||||||||||||||||||||    
T  7736418 gattccggttggatttactctataagt--cacatttccaatatatgcatat 7736370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 9685374 - 9685240
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| ||||||||||  ||||||| ||||||||||  | |||||||||| ||| |||||||||||||||||||||||||  ||||||  |||||||  ||    
T  9685374 cattgttgtcaaaatctcgacttatatcctaaaatttaggattttgcgacttttttcaccttcaacgactcaaatccatattagaatttcaaaatagaca 9685275  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||| ||||| |||||| ||||||    
T  9685274 aaatccatcgattttaattgcgattttatgatttc 9685240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 4247360 - 4247489
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| || | |||||||||||||| || |||||||  | ||||||||| |||||| ||| ||||||||  ||||||||||||||| |||||||     
T  4247360 ttgtcaaaatcccaatttaaatcctaaaattcaggattttgtaactttcttcactttcaacaacttaaatccatagtagaatcccaaaataggcaaaatt 4247459  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||| |||||| ||||||    
T  4247460 catcgattttgattgcgattttatgatttc 4247489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 217 - 310
Target Start/End: Original strand, 1977692 - 1977785
Alignment:
Q  217 ttttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||| | |||||||||||||||||||||||  |||||||| |||||| ||||||| | |||||||||||||| |||||| ||||||    
T  1977692 ttttgcgattttttccaccttcaacgactcaaatccatagtagaatcctaaaatatgcaaaattcgtcgattttgattgcgattttaggatttc 1977785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 17811350 - 17811480
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||||||||||||     |||||| | |||||||| || ||| |||||||||||||||||||||||||  ||||||   ||||||  ||    
T  17811350 catttttgtcaaaattccgacttat----taaaattcttgattttgtgacttttttcaccttcaacgactcaaatccatagtagaattttaaaatagaca 17811445  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||| ||||||||||||||| |||||||||||||    
T  17811446 aaatcgatcgattttgattgcgattttacgatttc 17811480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 296
Target Start/End: Complemental strand, 21846550 - 21846436
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| ||||||||||| ||||||| || |||||||||| ||| ||||| |||||||||||| ||||||  |||||| | |||| | | ||||||    
T  21846550 ttgtcaaaatcccgacttaaattctaaaattcaggattttgcgacttt-ttcacattcaacgactcacatccatagtagaattctaaaacaggtaaaatc 21846452  T
Q  281 catcgattttgattgc 296  Q
     |||||||||||||||    
T  21846451 aatcgattttgattgc 21846436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 310
Target Start/End: Complemental strand, 27510052 - 27509939
Alignment:
Q  197 ttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgc 296  Q
    |||||| |||||||  | |||||||||||||||||||| | |||||| ||||||| ||  ||||||   |||||| ||||||| |||| |||||||||||    
T  27510052 ttaaattctaaaataaaggattttgcgattttcttcacatccaacgattcaaatctatagtagaatttaaaaataggcaaaattcatcaattttgattgc 27509953  T
Q  297 aattttacgatttc 310  Q
     |||||||||||||    
T  27509952 gattttacgatttc 27509939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 181 - 280
Target Start/End: Original strand, 30294179 - 30294275
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| || ||||||||||||||||||| ||||||| |||||| ||||||||   ||||||||||||||   | |||| ||||||| ||||||||    
T  30294179 ttgtcaaaatcccaacttaaatcctaaaatccaggattttgtgattttattcacctt---cgactcaaatccatagcaaaatctcaaaataggcaaaatc 30294275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 257 - 319
Target Start/End: Complemental strand, 20570934 - 20570872
Alignment:
Q  257 tagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttcatacaaaat 319  Q
    |||||||  ||||||  ||||||||||||||||||||||||||||||||||||| || |||||    
T  20570934 tagaatctaaaaatagacaaaatccatcgattttgattgcaattttacgatttcttataaaat 20570872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 186 - 306
Target Start/End: Complemental strand, 26617596 - 26617472
Alignment:
Q  186 aaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcc--atgatagaatcccaaa--ataagcaaaatcc 281  Q
    ||||||| ||||| ||||||||||| || |||||||||| ||| |||||||||||||||  |||| |  ||  |||||| | |||  ||| ||||||||     
T  26617596 aaaattctgactttaatcctaaaattcaggattttgcgacttttttcaccttcaacgacataaattcatatagtagaattctaaaatataggcaaaatct 26617497  T
Q  282 atcgattttgattgcaattttacga 306  Q
    ||||||||||||||| |||||||||    
T  26617496 atcgattttgattgcgattttacga 26617472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 308 - 355
Target Start/End: Complemental strand, 21157761 - 21157714
Alignment:
Q  308 ttcatacaaaattgcagaattttaaagggttttgaagaactttgtcca 355  Q
    |||||||||||| ||||||||||||||| |||||||||| ||||||||    
T  21157761 ttcatacaaaatcgcagaattttaaaggattttgaagaattttgtcca 21157714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 171
Target Start/End: Complemental strand, 7725781 - 7725740
Alignment:
Q  130 cgcatttccaatatatgcatatgaagtagctatgatgtgttt 171  Q
    |||||||||||||||||||||| |||||| ||||||||||||    
T  7725781 cgcatttccaatatatgcatattaagtaggtatgatgtgttt 7725740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 250
Target Start/End: Original strand, 4574488 - 4574544
Alignment:
Q  194 gacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaat 250  Q
    ||||||||||||||||||||  ||||||||| |||  ||||||||||||| ||||||    
T  4574488 gacttaaatcctaaaatccagaattttgcgactttactcaccttcaacgattcaaat 4574544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 310
Target Start/End: Complemental strand, 8329972 - 8329937
Alignment:
Q  275 aaaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||| ||||||||||||||||||||||||||    
T  8329972 aaaatccattgattttgattgcaattttacgatttc 8329937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 254
Target Start/End: Complemental strand, 21157904 - 21157826
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 254  Q
    |||| ||||| |||||| |||||||||| |||||| || | |||||||| |||  |||| | |||||||||||||||||    
T  21157904 cattgttgtcgaaattctgacttaaatcttaaaattcagggttttgcgactttactcacttacaacgactcaaatccat 21157826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 26565476 - 26565442
Alignment:
Q  275 aaaatccatcgattttgattgcaattttacgattt 309  Q
    |||||||||| ||||||||||||||||||||||||    
T  26565476 aaaatccatcaattttgattgcaattttacgattt 26565442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 1e-41; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 29067283 - 29067417
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| ||||||||||| ||||||| || |||||||||| |||||||||||||||||||||||||||||  |||||||||||||||  ||    
T  29067283 cattgttgtcaaaatcccgacttaaattctaaaattcaggattttgcgactttcttcaccttcaacgactcaaatccatagtagaatcccaaaatagaca 29067382  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||||  |||||||||||||    
T  29067383 aaatccatcgattttgattgtgattttacgatttc 29067417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 181 - 356
Target Start/End: Complemental strand, 24649814 - 24649638
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaat-aagcaaaat 279  Q
    |||||||||| |||||||||||| ||||||| | ||||||  || || ||||||||||||||||||||||||||  |||||| ||||||| |||||||||    
T  24649814 ttgtcaaaatcccgacttaaatcgtaaaatctaggattttttgacttgcttcaccttcaacgactcaaatccatagtagaattccaaaataaagcaaaat 24649715  T
Q  280 ccatcgattttgattgcaattttacgatttcatacaaaattgcagaattttaaagggttttgaagaactttgtccat 356  Q
     |||| ||||||| ||  ||||||||||||||||||| || |||| ||||||||||||||||||||| ||| |||||    
T  24649714 tcatcaattttgactgtgattttacgatttcatacaatatcgcaggattttaaagggttttgaagaattttatccat 24649638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 20756043 - 20756172
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| |||||||||||  |||||| || |||||||||||||||||||||||||| |||||||||||||  |||||||  |||||| ||||||||    
T  20756043 ttgtcaaaatcccgacttaaattataaaattcaggattttgcgattttcttcaccttcaatgactcaaatccatagtagaatcttaaaataggcaaaatc 20756142  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
     |||||||||||||||||||||||||||||    
T  20756143 aatcgattttgattgcaattttacgatttc 20756172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 28745769 - 28745903
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| |||| ||||||||||||||  | |||||||||| ||||||||||||||||||||||||| |||  ||||||| |||||||  ||    
T  28745769 cattgttgtcaaaatcccgatttaaatcctaaaatttaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatctcaaaatagaca 28745868  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    |||| |||||||||||||||| |||||||||||||    
T  28745869 aaattcatcgattttgattgcgattttacgatttc 28745903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 24620333 - 24620196
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgat---tttcttcaccttcaacgactcaaatccatgatagaatcccaaaataa 272  Q
    |||| ||||||||||||||||||||||||||||||  | ||||||||||    ||||||||||||||||||||||||| ||   ||||||| |||||||     
T  24620333 cattgttgtcaaaattccgacttaaatcctaaaatttaagattttgcgacgactttcttcaccttcaacgactcaaattcacagtagaatctcaaaatag 24620234  T
Q  273 gcaaaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||| |||||||||| |||||||||||||||||||    
T  24620233 gcaaaattcatcgattttaattgcaattttacgatttc 24620196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 8156261 - 8156126
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag-c 274  Q
    |||| |||||||||| || |||||||| ||||||| ||  ||||| ||||||| ||||||||||| |||||||||||||  || ||||||||||| || |    
T  8156261 cattgttgtcaaaatcccaacttaaattctaaaattcagaattttacgatttttttcaccttcaatgactcaaatccatagtataatcccaaaattagac 8156162  T
Q  275 aaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||||||||| |||||||||||||    
T  8156161 aaaatccatcgattttgattgcgattttacgatttc 8156126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 3449416 - 3449288
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| ||||||||||||||||||| || |||||||||| |||||| |||||||||| || ||||| ||  |||||||| |||||| ||||||||    
T  3449416 ttgtcaaaatcccgacttaaatcctaaaattcaggattttgcgactttctttaccttcaacg-ctaaaatctatagtagaatcctaaaataggcaaaatc 3449318  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    ||| |||||| ||||| |||||||||||||    
T  3449317 catagatttttattgcgattttacgatttc 3449288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 177 - 302
Target Start/End: Original strand, 21963429 - 21963554
Alignment:
Q  177 attattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaa 276  Q
    |||||| | ||||| ||||||||||||||||||| || |||||| ||| |||||||||||| ||||||||||||||||  || ||||| |||||| ||||    
T  21963429 attatttttaaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagtaaaatcctaaaatatgcaa 21963528  T
Q  277 aatccatcgattttgattgcaatttt 302  Q
    ||||||||||||||||| || |||||    
T  21963529 aatccatcgattttgatagcgatttt 21963554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 177 - 302
Target Start/End: Original strand, 21985865 - 21985990
Alignment:
Q  177 attattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaa 276  Q
    |||||| | ||||| ||||||||||||||||||| || |||||| ||| |||||||||||| ||||||||||||||||  || ||||| |||||| ||||    
T  21985865 attatttttaaaatcccgacttaaatcctaaaattcaagattttacgactttcttcaccttgaacgactcaaatccatagtaaaatcctaaaatatgcaa 21985964  T
Q  277 aatccatcgattttgattgcaatttt 302  Q
    ||||||||||||||||| || |||||    
T  21985965 aatccatcgattttgatagcgatttt 21985990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 39427906 - 39428035
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||| |||| ||||||  ||||||||  |||||||| | ||||||||| |||||||||||||||| ||  |||||||||||||||  |||| ||    
T  39427906 ttgtcaaaatcccgatttaaattttaaaatcctggattttgcaactttcttcacgttcaacgactcaaatcgatagtagaatcccaaaatagacaaagtc 39428005  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||| |||||||||||||    
T  39428006 catcgattttgattgcgattttacgatttc 39428035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 17064320 - 17064454
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    ||||| ||||||||| |||||||||||| |||||| || |||||||||||| | ||||||||||||||||| ||| |||  |||||| | ||||||  ||    
T  17064320 cattaatgtcaaaatcccgacttaaatcttaaaattcaggattttgcgattgtgttcaccttcaacgactccaattcatagtagaattctaaaatagaca 17064419  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    |||| |||||||||| ||||| |||||||||||||    
T  17064420 aaattcatcgatttttattgcgattttacgatttc 17064454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 195 - 307
Target Start/End: Complemental strand, 22494892 - 22494780
Alignment:
Q  195 acttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgatt 294  Q
    |||||||||||||||||   |||||||||| ||| |||||||||||||||| |||| |||  |||||||| ||||||| |||||| ||||||||||||||    
T  22494892 acttaaatcctaaaatctgagattttgcgacttttttcaccttcaacgactaaaattcatagtagaatcctaaaataaacaaaattcatcgattttgatt 22494793  T
Q  295 gcaattttacgat 307  Q
    || ||||||||||    
T  22494792 gcgattttacgat 22494780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 184 - 303
Target Start/End: Complemental strand, 30727813 - 30727694
Alignment:
Q  184 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccat 283  Q
    ||||||| | |||||||||| ||||||||   ||||| ||| |||||||||||||||||||||||||| ||  |||||||||||||||  |||||| |||    
T  30727813 tcaaaatcctgacttaaatcttaaaatcctgaattttacgactttcttcaccttcaacgactcaaatctatagtagaatcccaaaatagacaaaattcat 30727714  T
Q  284 cgattttgattgcaatttta 303  Q
    ||||||||||||| ||||||    
T  30727713 cgattttgattgcgatttta 30727694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 194 - 302
Target Start/End: Original strand, 22137295 - 22137403
Alignment:
Q  194 gacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgat 293  Q
    ||||||||||||||||| || ||| || ||| |||||||||||| |||| |||||||||||  || |||||||||||| |||||||||||||||||| ||    
T  22137295 gacttaaatcctaaaattcaagatgttacgactttcttcaccttgaacgcctcaaatccatagtaaaatcccaaaatatgcaaaatccatcgattttaat 22137394  T
Q  294 tgcaatttt 302  Q
    ||| |||||    
T  22137395 tgcgatttt 22137403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 184 - 310
Target Start/End: Complemental strand, 22356175 - 22356048
Alignment:
Q  184 tcaaaattccgacttaaatcctaaaatccatgattttgcgattttctt-caccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcca 282  Q
    ||||||||||||||||||||||||||| || ||||||  |||||| || || ||||||| | |  ||| |||  |||||||| |||||||||||||||||    
T  22356175 tcaaaattccgacttaaatcctaaaattcaggattttaagattttttttcagcttcaacaatttgaattcatagtagaatcctaaaataagcaaaatcca 22356076  T
Q  283 tcgattttgattgcaattttacgatttc 310  Q
    |  ||||||||||| |||||||||||||    
T  22356075 tgaattttgattgcgattttacgatttc 22356048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 176 - 281
Target Start/End: Complemental strand, 15806635 - 15806531
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| ||||||||||||||| ||||||  ||||||||| ||| ||||||||||| |||||||||||||   |||||||||||| | |||    
T  15806635 cattgttgtcaaaat-ccgacttaaatcctacaatccagaattttgcgactttattcaccttcaatgactcaaatccatagcagaatcccaaaacaggca 15806537  T
Q  276 aaatcc 281  Q
    ||||||    
T  15806536 aaatcc 15806531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 199 - 281
Target Start/End: Complemental strand, 10873053 - 10872971
Alignment:
Q  199 aaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatcc 281  Q
    ||||||||||||||| ||||||| ||| || |||||||||||||||||||||||||   |||||| ||||||| |||||||||    
T  10873053 aaatcctaaaatccaggattttgtgatattattcaccttcaacgactcaaatccatagcagaatctcaaaataggcaaaatcc 10872971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 25870506 - 25870363
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacga----ctcaaatccatgatagaatcccaaaata 271  Q
    |||| ||||||||||  ||||||||||||||||||||| ||||||| || |||||||| |||||||||    ||||||| | |  ||||| | |||||||    
T  25870506 cattgttgtcaaaatctcgacttaaatcctaaaatccaagattttgtgactttcttcatcttcaacgaacgactcaaattcgtagtagaacctcaaaata 25870407  T
Q  272 agcaaaatccatcg-----attttgattgcaattttacgatttc 310  Q
     |||||||||||||     ||||||||||| |||||||||||||    
T  25870406 ggcaaaatccatcgatttgattttgattgcgattttacgatttc 25870363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 176 - 281
Target Start/End: Original strand, 27676355 - 27676460
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| | |||||||||| |||||| || |||||||||| ||| ||||||||| | |||||||||||||   |||||||||||||| | |    
T  27676355 cattgttgtcaaaatcctgacttaaatcgtaaaatgcaggattttgcgactttattcaccttctatgactcaaatccatagcagaatcccaaaataggta 27676454  T
Q  276 aaatcc 281  Q
    ||||||    
T  27676455 aaatcc 27676460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 17796267 - 17796362
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 271  Q
    |||||||||||||||||| ||||||||| ||||||| | ||||||| || ||| |||||||||||| ||| |||| |||   ||||||| ||||||    
T  17796267 cattattgtcaaaattccaacttaaatcataaaatctaggattttgtgactttattcaccttcaacaactaaaattcatagcagaatcctaaaata 17796362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 17796376 - 17796471
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 271  Q
    |||| ||||||||||||||||||||||| ||||||| | |||||| ||| ||| |||| ||||||| |||||||| |||   ||||||| ||||||    
T  17796376 cattgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatcttcaacaactcaaattcatagcagaatcctaaaata 17796471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 19104707 - 19104802
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 271  Q
    |||||||||||||||||| ||||||||| ||||||| | ||||||| || ||| |||||||||||| ||| |||| |||   ||||||| ||||||    
T  19104707 cattattgtcaaaattccaacttaaatcataaaatctaggattttgtgactttattcaccttcaacaactaaaattcatagcagaatcctaaaata 19104802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 19104816 - 19104911
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 271  Q
    |||| ||||||||||||||||||||||| ||||||| | |||||| ||| ||| |||| ||||||| |||||||| |||   ||||||| ||||||    
T  19104816 cattgttgtcaaaattccgacttaaatcataaaatctaggattttacgactttattcatcttcaacaactcaaattcatagcagaatcctaaaata 19104911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 181 - 254
Target Start/End: Original strand, 28135726 - 28135799
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 254  Q
    ||||||||||||||| ||||||| |||||| || |||||||||| ||| ||||| ||||  |||||||||||||    
T  28135726 ttgtcaaaattccgatttaaatcgtaaaattcaggattttgcgactttattcactttcagtgactcaaatccat 28135799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 257 - 310
Target Start/End: Original strand, 42696927 - 42696980
Alignment:
Q  257 tagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||| ||||||| ||||||| |||||||||||||||| |||||||||||||    
T  42696927 tagaatctcaaaataggcaaaattcatcgattttgattgcgattttacgatttc 42696980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 310
Target Start/End: Original strand, 17064508 - 17064543
Alignment:
Q  275 aaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||||||||||||||||| |||||    
T  17064508 aaaatccatcgattttgattgcaattttacaatttc 17064543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 17796485 - 17796580
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 271  Q
    |||| ||||||||||| ||| ||||||| ||||||| | |||||| ||| ||| |||||||||||| ||| |||| |||   ||||||| ||||||    
T  17796485 cattgttgtcaaaatttcgaattaaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaatcctaaaata 17796580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 271
Target Start/End: Original strand, 19104925 - 19105020
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaata 271  Q
    |||| ||||||||||| ||| ||||||| ||||||| | |||||| ||| ||| |||||||||||| ||| |||| |||   ||||||| ||||||    
T  19104925 cattgttgtcaaaatttcgaattaaatcataaaatctaggatttttcgactttattcaccttcaacaacttaaattcatagcagaatcctaaaata 19105020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 86; Significance: 5e-41; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 180 - 309
Target Start/End: Complemental strand, 3094379 - 3094250
Alignment:
Q  180 attgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 279  Q
    |||||||||||| ||||||||||| |||||| || |||||||| | |||||||||||||||||||||||||||||  |||||||| |||||| |||||||    
T  3094379 attgtcaaaatttcgacttaaatcttaaaattcaggattttgctactttcttcaccttcaacgactcaaatccatagtagaatcctaaaataggcaaaat 3094280  T
Q  280 ccatcgattttgattgcaattttacgattt 309  Q
    ||||||||||||||||| ||||||||||||    
T  3094279 ccatcgattttgattgcgattttacgattt 3094250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 5922048 - 5922182
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||| || |||||||||||||||||||| | ||||||  |||||||||||||||  ||    
T  5922048 cattgttgtcaaaatcccgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaacgacttatatccatagtagaatcccaaaatagaca 5922147  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||||||||||||||| ||||| |||||||    
T  5922148 aaatccatcgattttgattgcgattttgcgatttc 5922182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 181 - 308
Target Start/End: Original strand, 45403033 - 45403160
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    ||||||||||  |||||||||| |||||||||| |||||||||| |||||| ||||||||||||| ||||||||   |||||| ||||||||||||||||    
T  45403033 ttgtcaaaatcgcgacttaaattctaaaatccaagattttgcgactttcttgaccttcaacgacttaaatccatagaagaatctcaaaataagcaaaatc 45403132  T
Q  281 catcgattttgattgcaattttacgatt 308  Q
    |||||||||||||||| |||||||||||    
T  45403133 catcgattttgattgcgattttacgatt 45403160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 15294674 - 15294803
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||| ||||| ||||||||||||||||||| || |||||||||| ||| |||||||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  15294674 ttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaataggcaaaatc 15294773  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||| ||||||| |||||    
T  15294774 catcgattttgattgcgattttacaatttc 15294803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 15475043 - 15475172
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||| ||||| ||||||||||||||||||| || |||||||||| ||| |||||||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  15475043 ttgtaaaaatcccgacttaaatcctaaaattcaggattttgcgacttttttcaccttcaacgactcaaatcgatagtagaataccaaaataggcaaaatc 15475142  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||| ||||||| |||||    
T  15475143 catcgattttgattgcgattttacaatttc 15475172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 181 - 310
Target Start/End: Original strand, 17646997 - 17647126
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    ||||||||||||||||||||||| |||||| || |||||||||| ||||||||||||||||||||||||| |||  ||||||||||||||| | |||||     
T  17646997 ttgtcaaaattccgacttaaatcataaaattcaggattttgcgactttcttcaccttcaacgactcaaattcatagtagaatcccaaaataggaaaaatt 17647096  T
Q  281 catcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||  |||| ||||||||    
T  17647097 catcgattttgattgttatttaacgatttc 17647126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 11879599 - 11879733
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||||| ||||||||||||||||| || |||||||| | ||||||||| |||||||||||||||| ||  |||||||| |||||| | |    
T  11879599 cattgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaataggaa 11879698  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    |||| |||||||||||||||| |||||||||||||    
T  11879699 aaattcatcgattttgattgcgattttacgatttc 11879733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 11897015 - 11897149
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||||||||||| ||||||||||||||||| || |||||||| | ||||||||| |||||||||||||||| ||  |||||||| |||||| | |    
T  11897015 cattgttgtcaaaattctgacttaaatcctaaaattcaggattttgcaactttcttcactttcaacgactcaaatctatagtagaatcctaaaataggaa 11897114  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    |||| |||||||||||||||| |||||||||||||    
T  11897115 aaattcatcgattttgattgcgattttacgatttc 11897149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 181 - 310
Target Start/End: Complemental strand, 19704581 - 19704451
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgatttt-gcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 279  Q
    |||||||||| || ||||||||| |||||| || | |||| |||| |||||||||||||||||||||||||||||  |||||| ||| |||| |||||||    
T  19704581 ttgtcaaaatcccaacttaaatcttaaaattcaaggtttttgcgactttcttcaccttcaacgactcaaatccatagtagaattccataataggcaaaat 19704482  T
Q  280 ccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||||||||||||||||||    
T  19704481 ccatcgattttgattgcaattttacgatttc 19704451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 176 - 310
Target Start/End: Original strand, 31424162 - 31424296
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    ||||||||||||||| | ||||||||| ||||||| || |||||| ||| ||||||| | |||||||||||||||||||   |||||||||||||| |||    
T  31424162 cattattgtcaaaatcctgacttaaattctaaaattcaggattttacgactttcttccctttcaacgactcaaatccatagaagaatcccaaaataggca 31424261  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||| |||||||||||| |||||||||||||    
T  31424262 aaatccattgattttgattgcgattttacgatttc 31424296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 27836594 - 27836460
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| ||||||||||||  ||||| |||||||||| || ||||||||| |||| |||||||||||| ||| ||||||||  |||||| | ||||||||||    
T  27836594 cattgttgtcaaaattcaaacttagatcctaaaattcaggattttgcggttttattcaccttcaacaactgaaatccatagtagaattctaaaataagca 27836495  T
Q  276 aaatccatcgattttgattgcaattttacgatttc 310  Q
    |||| |||| ||||||||| ||||||||| |||||    
T  27836494 aaattcatcaattttgattacaattttacaatttc 27836460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 310
Target Start/End: Complemental strand, 29384425 - 29384313
Alignment:
Q  197 ttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgc 296  Q
    |||||||||||||||   |||||||||| |||||||||||||||||||||||||||||  || ||||| |||||| ||||||| |||||| |||||||||    
T  29384425 ttaaatcctaaaatcttagattttgcgactttcttcaccttcaacgactcaaatccatagtataatccaaaaataggcaaaattcatcga-tttgattgc 29384327  T
Q  297 aattttacgatttc 310  Q
     |||||||||||||    
T  29384326 gattttacgatttc 29384313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 192 - 310
Target Start/End: Complemental strand, 22910316 - 22910198
Alignment:
Q  192 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttg 291  Q
    |||||||||||||||||||  | |||||| ||| ||||||||| |||||||||||||||| ||  |||||||  |||||| ||||||||||| |||||||    
T  22910316 ccgacttaaatcctaaaatttaggattttacgactttcttcacattcaacgactcaaatctatagtagaatcttaaaataggcaaaatccattgattttg 22910217  T
Q  292 attgcaattttacgatttc 310  Q
    ||||| |||||| ||||||    
T  22910216 attgcgattttaagatttc 22910198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 216 - 313
Target Start/End: Original strand, 6810861 - 6810957
Alignment:
Q  216 attttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttcata 313  Q
    ||||||||| |||||||||||||||||||||||||||||  ||||||   |||||| ||||||| |||||||||||||| | ||||||||||||||||    
T  6810861 attttgcgactttcttcaccttcaacgactcaaatccatagtagaattttaaaataggcaaaat-catcgattttgattacgattttacgatttcata 6810957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 225 - 310
Target Start/End: Original strand, 23142223 - 23142308
Alignment:
Q  225 ttttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgcaattttacgatttc 310  Q
    ||||||||| ||||||||||| ||||||||  |||||||| |||||| ||||||| |||||||||||||||| |||||||||||||    
T  23142223 ttttcttcaacttcaacgactgaaatccatagtagaatcctaaaataggcaaaattcatcgattttgattgcgattttacgatttc 23142308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 477178 - 477101
Alignment:
Q  175 acattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatcc 252  Q
    ||||| |||||||||| | |||||||||||||||||||| ||||||| || ||||||||||||||| |||| ||||||    
T  477178 acattgttgtcaaaatcctgacttaaatcctaaaatccaggattttgtgactttcttcaccttcaatgacttaaatcc 477101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 15761569 - 15761466
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| ||||||||||  |||||||||||||||| |||| ||||||| || ||| || |||||||||||||||||| |||   | |||||||||||| |||    
T  15761569 cattgttgtcaaaatctcgacttaaatcctaaactccaggattttgtgagtttatttaccttcaacgactcaaattcatagcaaaatcccaaaataggca 15761470  T
Q  276 aaat 279  Q
    ||||    
T  15761469 aaat 15761466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 254
Target Start/End: Complemental strand, 24056680 - 24056620
Alignment:
Q  194 gacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 254  Q
    |||||||||||||||||||| |||||||||| ||| ||||| || ||||||||||||||||    
T  24056680 gacttaaatcctaaaatccaggattttgcgactttattcacatttaacgactcaaatccat 24056620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 23136348 - 23136397
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgat 225  Q
    ||||||||||||||| ||||||||||||||||||| || |||||||||||    
T  23136348 cattattgtcaaaatcccgacttaaatcctaaaattcaggattttgcgat 23136397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 197 - 309
Target Start/End: Original strand, 15231744 - 15231856
Alignment:
Q  197 ttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttgattgc 296  Q
    |||||||||||| |  | ||||||||||| ||||||||||||||||||| |||| |||  || ||||  |||||| |||||||||| |   |||||||||    
T  15231744 ttaaatcctaaactttaagattttgcgatgttcttcaccttcaacgactgaaattcatactaaaatcttaaaataggcaaaatccaacatatttgattgc 15231843  T
Q  297 aattttacgattt 309  Q
     ||||||| ||||    
T  15231844 gattttacaattt 15231856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 296
Target Start/End: Complemental strand, 6292467 - 6292352
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||| ||||| |||||||||||| ||||||  | ||||||| || ||| |||| ||| ||||||||||| ||||  || ||| | |||||||| |||||     
T  6292467 ttgttaaaataccgacttaaatcttaaaatttaagattttgtgacttttttcatctttaacgactcaaacccatagtataattctaaaataagaaaaatt 6292368  T
Q  281 catcgattttgattgc 296  Q
    || |||||||||||||    
T  6292367 caacgattttgattgc 6292352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 176 - 310
Target Start/End: Complemental strand, 7489414 - 7489279
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcc----caaaata 271  Q
    ||||||||||||||| || | ||||||| |||||| ||  |||||||   |||||||||||||||||||| |||||| |  |||||| |     ||||||    
T  7489414 cattattgtcaaaatccccaattaaatcgtaaaatacagaattttgc---tttcttcaccttcaacgactaaaatccgtagtagaattctaaataaaata 7489318  T
Q  272 agcaaaatccatcgattttgattgcaattttacgatttc 310  Q
      ||||||  |||||||||||||||||||||| ||||||    
T  7489317 gacaaaatttatcgattttgattgcaattttatgatttc 7489279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 275 - 310
Target Start/End: Complemental strand, 29384240 - 29384205
Alignment:
Q  275 aaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||||||||||||||||||| |||||||||||||    
T  29384240 aaaatccatcgattttgattgcgattttacgatttc 29384205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 207 - 280
Target Start/End: Original strand, 8582000 - 8582073
Alignment:
Q  207 aaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatc 280  Q
    |||||||||||||||||  ||| |||||||| || ||||||||| ||| | ||||||| |||||| | ||||||    
T  8582000 aaatccatgattttgcgtctttgttcacctttaatgactcaaattcataacagaatcctaaaatagggaaaatc 8582073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 266 - 310
Target Start/End: Complemental strand, 9212295 - 9212251
Alignment:
Q  266 aaaataagcaaaatccatcgattttgattgcaattttacgatttc 310  Q
    |||||| | |||||||||||||||||||||| |||||| ||||||    
T  9212295 aaaataggaaaaatccatcgattttgattgcgattttaagatttc 9212251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 228
Target Start/End: Complemental strand, 9212348 - 9212296
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgatttt 228  Q
    |||| ||||||||||||  ||||||||||||||||| | | ||||||||||||    
T  9212348 cattgttgtcaaaattctcacttaaatcctaaaatctaggtttttgcgatttt 9212296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 309
Target Start/End: Complemental strand, 26575049 - 26575017
Alignment:
Q  277 aatccatcgattttgattgcaattttacgattt 309  Q
    |||||||||||||||||||| ||||||||||||    
T  26575049 aatccatcgattttgattgctattttacgattt 26575017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 174 - 310
Target Start/End: Complemental strand, 93836 - 93702
Alignment:
Q  174 tacattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataag 273  Q
    |||||| |||||||||| ||||||||||||||||||||||  ||||||  |||||||||||| ||||| ||||||||||||   ||||| | |||||| |    
T  93836 tacattgttgtcaaaatcccgacttaaatcctaaaatccagaattttg--attttcttcaccctcaacaactcaaatccatagaagaattctaaaatagg 93739  T
Q  274 caaaatccatcgattttgattgcaattttacgatttc 310  Q
    | ||||||||||||||||||||| |||||||||||||    
T  93738 cgaaatccatcgattttgattgcgattttacgatttc 93702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 275 - 309
Target Start/End: Complemental strand, 93633 - 93599
Alignment:
Q  275 aaaatccatcgattttgattgcaattttacgattt 309  Q
    |||||||||||||||||||||| ||||||||||||    
T  93633 aaaatccatcgattttgattgcgattttacgattt 93599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0510 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0510
Description:

Target: scaffold0510; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 192 - 310
Target Start/End: Complemental strand, 215 - 96
Alignment:
Q  192 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagc-aaaatccatcgatttt 290  Q
    ||||||||||||||||||| || |||||||||| ||||||||| |||||||||||||||||||  || ||| | |||||| || ||||||||||||||||    
T  215 ccgacttaaatcctaaaatgcaggattttgcgactttcttcacgttcaacgactcaaatccatagtaaaattctaaaataggcgaaaatccatcgatttt 116  T
Q  291 gattgcaattttacgatttc 310  Q
    |||||  ||||||| |||||    
T  115 gattgagattttacaatttc 96  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0417 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 192 - 310
Target Start/End: Complemental strand, 7569 - 7451
Alignment:
Q  192 ccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaatccatcgattttg 291  Q
    ||||||||||| ||||||| || |||||||||| |||||| |||||||||||   ||||||||  |||||||| |||||| ||||||| ||||||||||     
T  7569 ccgacttaaattctaaaattcaggattttgcgactttctttaccttcaacgaacaaaatccatagtagaatcctaaaataggcaaaattcatcgatttta 7470  T
Q  292 attgcaattttacgatttc 310  Q
    ||||| |||||||||||||    
T  7469 attgcgattttacgatttc 7451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 48918 - 48816
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagca 275  Q
    |||| |||| |||||||||||||||||||||||||| |  ||||||| | ||| |||||||||||||||||||||||||   |||||||||||| |||||    
T  48918 cattgttgtgaaaattccgacttaaatcctaaaatctagaattttgcaactttattcaccttcaacgactcaaatccatatgagaatcccaaaa-aagca 48820  T
Q  276 aaat 279  Q
    ||||    
T  48819 aaat 48816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 217 - 279
Target Start/End: Complemental strand, 61472 - 61410
Alignment:
Q  217 ttttgcgattttcttcaccttcaacgactcaaatccatgatagaatcccaaaataagcaaaat 279  Q
    |||||||| ||| ||| |||||||||  ||||||||||   ||||||||||||||||||||||    
T  61472 ttttgcgactttattcgccttcaacggttcaaatccatatgagaatcccaaaataagcaaaat 61410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 254
Target Start/End: Complemental strand, 37296 - 37218
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 254  Q
    |||| |||||||||| |||||||||||  |||||| ||  ||||||| ||||| |||||||||||| ||||||||||||    
T  37296 cattgttgtcaaaatgccgacttaaattttaaaattcagaattttgcaattttattcaccttcaacaactcaaatccat 37218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0603 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0603
Description:

Target: scaffold0603; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 254
Target Start/End: Complemental strand, 9150 - 9072
Alignment:
Q  176 cattattgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaatccat 254  Q
    |||| |||||||||| | || ||||||  ||||||  | ||||||| |||||| |||||||||||||||||||||||||    
T  9150 cattgttgtcaaaatcctgatttaaattttaaaatgtaggattttgtgattttattcaccttcaacgactcaaatccat 9072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 250
Target Start/End: Complemental strand, 35184 - 35115
Alignment:
Q  181 ttgtcaaaattccgacttaaatcctaaaatccatgattttgcgattttcttcaccttcaacgactcaaat 250  Q
    ||||||||||  |||||||||| ||||||| ||| ||||||  | ||| |||||||| ||||||||||||    
T  35184 ttgtcaaaatctcgacttaaattctaaaattcataattttggaactttattcacctttaacgactcaaat 35115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 277 - 309
Target Start/End: Original strand, 18587 - 18619
Alignment:
Q  277 aatccatcgattttgattgcaattttacgattt 309  Q
    |||||||| ||||||||||||||||||||||||    
T  18587 aatccatctattttgattgcaattttacgattt 18619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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