View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6753_high_9 (Length: 311)
Name: NF6753_high_9
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6753_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 20 - 304
Target Start/End: Original strand, 51810546 - 51810834
Alignment:
| Q |
20 |
actccaacttataacatttggcatttagaaaaatagttttacaccgacgtttattgacacatcttcannnnnnn--atatcatgctattagttttaaaat |
117 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||| |||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
51810546 |
actccaacttacaacatttggcatttggaaaaatagttttacatcgacatttattgacacatcttcatttttttttatatcatgctattagttttaaaat |
51810645 |
T |
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| Q |
118 |
atctataaaaatagtggaatgacatgaataatgtatttttattattaacnnnnnnnn--gatgtatttttattaaatgacaatgtaaataatagatcttt |
215 |
Q |
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|||||||||||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||||||| |||||| |
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| T |
51810646 |
atctataaaaatagcggaatgacatgaataatgtagttttattattaacaaaaaaaaatgatgtatttttattatatgacaatgtaaataatatatcttt |
51810745 |
T |
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| Q |
216 |
tctcgttctataacttgaagaccaaattctcctcgaaccctttgctctcatgctaacctttttccttcatcatcgttcgatcgtgttga |
304 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51810746 |
tctcgttctataacttgaagaccaaattctcctcgaaccctttgctctcatgctaacctttttccttcatcatcgttcgatcgtgttga |
51810834 |
T |
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