View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6753_low_1 (Length: 568)

Name: NF6753_low_1
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6753_low_1
NF6753_low_1
[»] chr2 (12 HSPs)
chr2 (33-439)||(9322338-9322744)
chr2 (438-555)||(9322779-9322896)
chr2 (208-439)||(11424415-11424639)
chr2 (260-375)||(9330583-9330698)
chr2 (457-545)||(11424235-11424323)
chr2 (473-549)||(9330826-9330902)
chr2 (284-337)||(11425916-11425969)
chr2 (402-439)||(9330754-9330791)
chr2 (19-50)||(9322299-9322330)
chr2 (493-555)||(32304267-32304329)
chr2 (386-439)||(11425803-11425856)
chr2 (499-555)||(11425652-11425708)


Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 33 - 439
Target Start/End: Original strand, 9322338 - 9322744
Alignment:
Q  33 taagtttaaatgtatatttagaatcaagatgagtttcacataaaaaccataannnnnnngaaacttaagatgtaacttttgttaaaagcacaacggcaag 132  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||       |||||||||||||||||||||||||||||||||||||||||    
T  9322338 taagtttaaatgtatatttagaatcaagatgagtttcacataaataccataatttttttgaaacttaagatgtaacttttgttaaaagcacaacggcaag 9322437  T
Q  133 gggtgattctaacaaactcatttgcaatccaaacatgcacttaatgttctcataattgcagcaaacaattatataaaatgaaccaaaaatagaactgcta 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9322438 gggtgattctaacaaactcatttgcaatccaaacatgcacttaatgttctcataattgcagcaaacaattatataaaatgaaccaaaaatagaactgcta 9322537  T
Q  233 aaccattcctctaccaacttgtacaatctttcatctcttgtacttgcaaacaaatgatcatttcatgacacattatcattttaagtcaaaattaaatggt 332  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9322538 aaccattcctctaccaacttgtacaatctttcatctcttgtacttgcaaacaaatgatcatttcatgacacattatcattttaagtcaaaattaaatggt 9322637  T
Q  333 catattcaaccatgtgctagccatgaatgtgttgtacaccaagnnnnnnntggttaatacaaacatgttaaaaagccatgctctaaacaaatatgggatg 432  Q
    ||||||||||||||||||||||||||||||||| |||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9322638 catattcaaccatgtgctagccatgaatgtgttttacaccaagaaaaaaatggttaatacaaacatgttaaaaagccatgctctaaacaaatatgggatg 9322737  T
Q  433 gtaccaa 439  Q
    |||||||    
T  9322738 gtaccaa 9322744  T

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Target: chr2; HSP #2
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 438 - 555
Target Start/End: Original strand, 9322779 - 9322896
Alignment:
Q  438 aagtagttagcatgagccaccaggcctttaagaaaccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggattt 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9322779 aagtagttagcatgagccaccaggcctttaagaaaccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggattt 9322878  T
Q  538 cccatttctaacaccaaa 555  Q
    ||||||||||||| ||||    
T  9322879 cccatttctaacatcaaa 9322896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 208 - 439
Target Start/End: Complemental strand, 11424639 - 11424415
Alignment:
Q  208 aaatgaaccaaaaatagaactgctaaaccattcctctaccaacttgtacaatctttcatctcttgtacttgcaaacaaatgatcatttcatgacacatta 307  Q
    |||| ||||| ||||||||||||||||||||||| || |||| |||||||| | |||||||||||  ||   |||||||||||||||||||||||||||     
T  11424639 aaattaaccacaaatagaactgctaaaccattccactgccaaattgtacaa-cattcatctcttg--ct---aaacaaatgatcatttcatgacacattc 11424546  T
Q  308 tcattttaagtcaaaattaaatggtcatattcaaccatgtgctagccatgaatgtgttgtacaccaagnnnnnnntggttaatacaaacatgttaaaaag 407  Q
     ||||||||| |||||| |||||||||||| ||| ||||| ||| ||||| || || | ||||  ||        |||||||||||||||||||||||||    
T  11424545 ccattttaagacaaaatcaaatggtcatatccaatcatgtactacccatgtatctgctttacattaa-caaaaattggttaatacaaacatgttaaaaag 11424447  T
Q  408 ccatgctctaaacaaatatgggatggtaccaa 439  Q
    ||||||||||||||||||||||||| ||||||    
T  11424446 ccatgctctaaacaaatatgggatgataccaa 11424415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 260 - 375
Target Start/End: Original strand, 9330583 - 9330698
Alignment:
Q  260 ctttcatctcttgtacttgcaaacaaatgatcatttcatgacacattatcattttaagtcaaaattaaatggtcatattcaaccatgtgctagccatgaa 359  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||| ||| |    
T  9330583 ctttcatctcttgtacttgcaaacaaatgaacatttcatgacacattaccattttaagacaaaattaaatggacatattcaaccatgtgctagcaatgta 9330682  T
Q  360 tgtgttgtacaccaag 375  Q
    |||| | |||||||||    
T  9330683 tgtgctttacaccaag 9330698  T

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Target: chr2; HSP #5
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 457 - 545
Target Start/End: Complemental strand, 11424323 - 11424235
Alignment:
Q  457 ccaggcctttaagaaaccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggatttcccatttc 545  Q
    |||||||||| ||||||||||| ||||||||||||  ||||||||| |||||| ||| || |||| |||||||||||||||||||||||    
T  11424323 ccaggcctttcagaaaccgatcgaatacatcgaattgctattcctaggacctccttcattcccttttctacaactggatttcccatttc 11424235  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 473 - 549
Target Start/End: Original strand, 9330826 - 9330902
Alignment:
Q  473 ccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggatttcccatttctaac 549  Q
    |||||| |||| |||||||| ||||||||| |||||||||| || |||| ||||||| | |||||||||||||||||    
T  9330826 ccgatcaaatatatcgaatcgctattcctaggacctcattcattcccttttctacaattagatttcccatttctaac 9330902  T

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Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 284 - 337
Target Start/End: Complemental strand, 11425969 - 11425916
Alignment:
Q  284 aaatgatcatttcatgacacattatcattttaagtcaaaattaaatggtcatat 337  Q
    |||||||||||||||||||||||  ||||||||| |||||| ||||||||||||    
T  11425969 aaatgatcatttcatgacacattcccattttaagacaaaatcaaatggtcatat 11425916  T

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Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 402 - 439
Target Start/End: Original strand, 9330754 - 9330791
Alignment:
Q  402 aaaaagccatgctctaaacaaatatgggatggtaccaa 439  Q
    |||||| |||||||||||||||||||||||||||||||    
T  9330754 aaaaagtcatgctctaaacaaatatgggatggtaccaa 9330791  T

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Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 50
Target Start/End: Original strand, 9322299 - 9322330
Alignment:
Q  19 aattttgtcacgaataagtttaaatgtatatt 50  Q
    ||||||||||||||||||||||||||||||||    
T  9322299 aattttgtcacgaataagtttaaatgtatatt 9322330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 493 - 555
Target Start/End: Original strand, 32304267 - 32304329
Alignment:
Q  493 actattcctaagacctcattcttttccttctctacaactggatttcccatttctaacaccaaa 555  Q
    |||||||||| |||||| ||| || |||| ||||||||| |||||||||||||| ||| ||||    
T  32304267 actattcctatgacctccttcattcccttttctacaactagatttcccatttctgacatcaaa 32304329  T

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Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 439
Target Start/End: Complemental strand, 11425856 - 11425803
Alignment:
Q  386 ttaatacaaacatgttaaaaagccatgctctaaacaaatatgggatggtaccaa 439  Q
    |||||||| |||| |||||||||||||| ||||||||||| | |||| ||||||    
T  11425856 ttaatacagacatcttaaaaagccatgccctaaacaaatacgagatgataccaa 11425803  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 499 - 555
Target Start/End: Complemental strand, 11425708 - 11425652
Alignment:
Q  499 cctaagacctcattcttttccttctctacaactggatttcccatttctaacaccaaa 555  Q
    |||| |||||| ||| || |||| |||||||||||||| ||||||||||||| ||||    
T  11425708 cctaggacctccttcattcccttttctacaactggattccccatttctaacatcaaa 11425652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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