View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6753_low_12 (Length: 280)
Name: NF6753_low_12
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6753_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 6 - 264
Target Start/End: Complemental strand, 16456125 - 16455867
Alignment:
| Q |
6 |
aatgatgaggtggcagtgttggtgtatgggatgcatgagttttagtagctatataagtaatagtaagtcagagaataggtagctaagtattctgttattc |
105 |
Q |
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| T |
16456125 |
aatgatgaggtggcagtgttggtgtatgggatgcatgagttttagtagctatataagtaatagtaagtcagagaataggtagctaagtattctgttattc |
16456026 |
T |
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| Q |
106 |
tgtggggtcactttgttagtgatttgggagcactgcgtgctatcagggactgatagtatctcactatcagtttgttactccttatttctcttgtaattgt |
205 |
Q |
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| T |
16456025 |
tgtggggtcactttgttagtgatttgggagcactgcgtgctatcagggactgatagtatctcactatcagtttgttactccttatttctcttgtaattgt |
16455926 |
T |
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| Q |
206 |
tcatcaccattaatacaattacattctttttcttcactatttcattgttattgttactg |
264 |
Q |
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| T |
16455925 |
tcatcaccattaatacaattacaatctttttcttcactatttcattgatattgttactg |
16455867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 6 - 228
Target Start/End: Complemental strand, 621125 - 620894
Alignment:
| Q |
6 |
aatgatgaggtggcagtgttggtgtatgggatgcatgagttttagtagctatataagtaatagtaagtcagagaata-ggtagctaagtattctgttatt |
104 |
Q |
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|||||||||||| |||| | |||| ||| |||||||||||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
621125 |
aatgatgaggtgtcagtttcggtgcatgtgatgcatgagttttgttaactatataagtaatagtaagtcagagaataaggtagctaagtattctgttatt |
621026 |
T |
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| Q |
105 |
ctgtggggtcactttgttagtgatttgggagcactgcgtgctatcagggactgatagtatctcactatcagtttgttac--------tccttatttctct |
196 |
Q |
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| T |
621025 |
ctgtggggtctctttgttagtgatttgggagcactgcgtgctatgagggattgatagtatctcactatcagtttgttacgcttttgtcccttatttctct |
620926 |
T |
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| Q |
197 |
tgtaattgttcatcaccattaatacaattaca |
228 |
Q |
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|||||||||||||||||||| ||||||||||| |
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| T |
620925 |
tgtaattgttcatcaccattgatacaattaca |
620894 |
T |
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