View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6753_low_15 (Length: 257)

Name: NF6753_low_15
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6753_low_15
NF6753_low_15
[»] chr3 (1 HSPs)
chr3 (1-238)||(27235965-27236202)
[»] chr4 (5 HSPs)
chr4 (5-238)||(56561912-56562145)
chr4 (5-238)||(16837120-16837358)
chr4 (5-114)||(53008811-53008920)
chr4 (146-238)||(11353564-11353656)
chr4 (5-105)||(11353424-11353523)
[»] chr2 (4 HSPs)
chr2 (5-238)||(5988100-5988333)
chr2 (1-176)||(45486996-45487171)
chr2 (172-238)||(45499041-45499107)
chr2 (76-114)||(10781941-10781979)
[»] chr5 (1 HSPs)
chr5 (5-238)||(9506555-9506788)
[»] scaffold0014 (2 HSPs)
scaffold0014 (139-234)||(63974-64069)
scaffold0014 (5-64)||(64070-64129)
[»] chr8 (1 HSPs)
chr8 (42-116)||(1290200-1290274)
[»] chr6 (1 HSPs)
chr6 (69-111)||(15566135-15566177)


Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 27236202 - 27235965
Alignment:
Q  1 tctacagtaaattccatgttcagttacacatttcaggaaaccttgctgaacaagtaaactatctattttcttattccaagctcttggagcttgctttaaa 100  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||    
T  27236202 tctacagtaaatttcatgttcagttacacatttcaggaaaccttgctgaacaagaaaactatctattttcttattccaagctcttggagcttgcttcaaa 27236103  T
Q  101 ccatacagagctttgtcaagcttatatacatactcctcctttccctttatctcaaatcctggtggttaattcacatatacttcttctgcaagctcaccat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||    
T  27236102 ccatacagagctttgtcaagcttatatacatactcctcctttccctttatctcaaatcctggtggttgattcacatatacttcttcttcaagctcaccat 27236003  T
Q  201 tgagaaatgctgatttcacatctaactggtacattgac 238  Q
    |||||||||||||||||||||||||||||| |||||||    
T  27236002 tgagaaatgctgatttcacatctaactggtgcattgac 27235965  T

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Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 56562145 - 56561912
Alignment:
Q  5 cagtaaattccatgttcagttacacatttcaggaaaccttgctgaacaagtaaactatctattttcttattccaagctcttggagcttgctttaaaccat 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||    
T  56562145 cagtaaattccatgttcagttacacatttcaggaaaccttgttgaacaagaaaactatctattttcttattccaaactcttggagctttctttaaaccat 56562046  T
Q  105 acagagctttgtcaagcttatatacatactcctcctttccctttatctcaaatcctggtggttaattcacatatacttcttctgcaagctcaccattgag 204  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  56562045 acagagctttgtcaaacttatatacatactcctcctttccctttatctcaaatcctggtggttgattcacatatacttcttcttcaagctcaccattgag 56561946  T
Q  205 aaatgctgatttcacatctaactggtacattgac 238  Q
    ||||| ||||||||||||||||||||||||||||    
T  56561945 aaatgttgatttcacatctaactggtacattgac 56561912  T

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Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 16837120 - 16837358
Alignment:
Q  5 cagtaaattccatgttcagttacacatttcaggaaaccttgctgaacaagtaaactatctattttcttattccaagctcttggagcttgctttaaaccat 104  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  16837120 cagtaaattccatgttcagttacacatttcaggaaaccttgttgaacaagaaaactatctattttcttattccaagctcttggagcttgctttaaaccat 16837219  T
Q  105 acagagctttgtcaagcttatatacatactcctcctttccctttatctcaaatcctggtggttaattcacatatacttcttctgc-----aagctcacca 199  Q
    |||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||| ||||||||||||||||||| |     ||||||||||    
T  16837220 acagagctttgtcaagtttatatacatacccctcctttccctttatctcaaatcctagtggttgattcacatatacttcttcttcaagctaagctcacca 16837319  T
Q  200 ttgagaaatgctgatttcacatctaactggtacattgac 238  Q
    |||||||||||||||||||||||||||||||||||||||    
T  16837320 ttgagaaatgctgatttcacatctaactggtacattgac 16837358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 5 - 114
Target Start/End: Complemental strand, 53008920 - 53008811
Alignment:
Q  5 cagtaaattccatgttcagttacacatttcaggaaaccttgctgaacaagtaaactatctattttcttattccaagctcttggagcttgctttaaaccat 104  Q
    ||||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  53008920 cagtaaattccatgttcagttacacatttaaggaaaccttgttgaagaagaaaactatctattttcttattccaagctcttggagcttgctttaaaccat 53008821  T
Q  105 acagagcttt 114  Q
    ||||||||||    
T  53008820 acagagcttt 53008811  T

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Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 146 - 238
Target Start/End: Original strand, 11353564 - 11353656
Alignment:
Q  146 tttatctcaaatcctggtggttaattcacatatacttcttctgcaagctcaccattgagaaatgctgatttcacatctaactggtacattgac 238  Q
    ||||||||||| ||||||||||   | ||||||||||||||| | | |||||||||| |||||||||| || ||||||||| | |||||||||    
T  11353564 tttatctcaaaacctggtggttggcttacatatacttcttcttccaactcaccattgtgaaatgctgacttaacatctaaccgatacattgac 11353656  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 11353424 - 11353523
Alignment:
Q  5 cagtaaattccatgttcagttacacatttcaggaaaccttgctgaacaagtaaactatctattttcttattccaagctcttggagcttgctttaaaccat 104  Q
    |||||||| ||||| ||| | |||||||||   ||||||||||||| ||| || | |||||| ||||| ||| ||||| | ||||||||| |||||||||    
T  11353424 cagtaaatgccatgctcattcacacatttctcaaaaccttgctgaagaagaaagccatctatcttcttgttctaagctatgggagcttgc-ttaaaccat 11353522  T

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Target: chr2 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 5988333 - 5988100
Alignment:
Q  5 cagtaaattccatgttcagttacacatttcaggaaaccttgctgaacaagtaaactatctattttcttattccaagctcttggagcttgctttaaaccat 104  Q
    |||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  5988333 cagtaaattccatgtttagttacacatttcaggaaaccttgttgaacaagaaaactatctattttcttactccaagctcttggagcttgctttaaactat 5988234  T
Q  105 acagagctttgtcaagcttatatacatactcctcctttccctttatctcaaatcctggtggttaattcacatatacttcttctgcaagctcaccattgag 204  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||    
T  5988233 acagagctttgtcaagcttatatacatactccccctttccctttatctcaaatcctggtggttgattcacatatatttcttcttcaagctcaccattgag 5988134  T
Q  205 aaatgctgatttcacatctaactggtacattgac 238  Q
    ||||||||||||||||||||||||||||||||||    
T  5988133 aaatgctgatttcacatctaactggtacattgac 5988100  T

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Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 176
Target Start/End: Original strand, 45486996 - 45487171
Alignment:
Q  1 tctacagtaaattccatgttcagttacacatttcaggaaaccttgctgaacaagtaaactatctattttcttattccaagctcttggagcttgctttaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||    
T  45486996 tctacagtaaattccatgttcagttacacatttcaggaaaccttgttgaacaagaaaactatatattttcttattccaagctcttggagcttgctttaaa 45487095  T
Q  101 ccatacagagctttgtcaagcttatatacatactcctcctttccctttatctcaaatcctggtggttaattcacat 176  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||    
T  45487096 tcatacagagctttgtcaagcttatatacatactcctcctttccctttatctcaaatcatggtggttgtttcacat 45487171  T

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Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 172 - 238
Target Start/End: Original strand, 45499041 - 45499107
Alignment:
Q  172 cacatatacttcttctgcaagctcaccattgagaaatgctgatttcacatctaactggtacattgac 238  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45499041 cacatatacttcttcttcaagctcaccattgagaaatgctgatttcacatctaactggtacattgac 45499107  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 114
Target Start/End: Original strand, 10781941 - 10781979
Alignment:
Q  76 ccaagctcttggagcttgctttaaaccatacagagcttt 114  Q
    |||||||||||||||||||||||||||||| | ||||||    
T  10781941 ccaagctcttggagcttgctttaaaccatataaagcttt 10781979  T

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Target: chr5 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 5 - 238
Target Start/End: Complemental strand, 9506788 - 9506555
Alignment:
Q  5 cagtaaattccatgttcagttacacatttcaggaaaccttgctgaacaagtaaactatctattttcttattccaagctcttggagcttgctttaaaccat 104  Q
    |||||||||||||||||||||||||| |||| ||||||||| |||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||    
T  9506788 cagtaaattccatgttcagttacacacttcatgaaaccttgttgaacaagaaaattatctattttcttattccaagctcttgtagcttgctttaaaccat 9506689  T
Q  105 acagagctttgtcaagcttatatacatactcctcctttccctttatctcaaatcctggtggttaattcacatatacttcttctgcaagctcaccattgag 204  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||| |||||||||||||| ||||||||||||||||    
T  9506688 acagagctttgtcaagcttatatacatactcctccttttcctttatctcaaatcatggtggttgattcgcatatacttcttcttcaagctcaccattgag 9506589  T
Q  205 aaatgctgatttcacatctaactggtacattgac 238  Q
    ||||| ||||||||||||||||||||||||||||    
T  9506588 aaatgttgatttcacatctaactggtacattgac 9506555  T

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Target: scaffold0014 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 139 - 234
Target Start/End: Complemental strand, 64069 - 63974
Alignment:
Q  139 ctttccctttatctcaaatcctggtggttaattcacatatacttcttctgcaagctcaccattgagaaatgctgatttcacatctaactggtacat 234  Q
    |||||||||||||||| |||||||||||| ||||||||||||||| ||| | | |||||||||||||||  | ||||| |||||||||||||||||    
T  64069 ctttccctttatctcatatcctggtggttgattcacatatacttcctcttctaactcaccattgagaaaaacagattttacatctaactggtacat 63974  T

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Target: scaffold0014; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 5 - 64
Target Start/End: Complemental strand, 64129 - 64070
Alignment:
Q  5 cagtaaattccatgttcagttacacatttcaggaaaccttgctgaacaagtaaactatct 64  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||    
T  64129 cagtaaatttcatgttgagttacacatttcaggaaaccttgctgaacaagaaaactatct 64070  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 116
Target Start/End: Complemental strand, 1290274 - 1290200
Alignment:
Q  42 cttgctgaacaagtaaactatctattttcttattccaagctcttggagcttgctttaaaccatacagagctttgt 116  Q
    ||||||| ||||| ||| | || ||| ||||||||||||||||||| ||||| || || ||||| ||||||||||    
T  1290274 cttgctgcacaagaaaattgtcaattctcttattccaagctcttggtgcttgtttcaatccatagagagctttgt 1290200  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 69 - 111
Target Start/End: Original strand, 15566135 - 15566177
Alignment:
Q  69 tcttattccaagctcttggagcttgctttaaaccatacagagc 111  Q
    |||||||||| ||||||||||||||||| |||||||| |||||    
T  15566135 tcttattccaggctcttggagcttgcttcaaaccatatagagc 15566177  T

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