View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6753_low_18 (Length: 228)
Name: NF6753_low_18
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6753_low_18 |
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| [»] scaffold0023 (1 HSPs) |
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Alignment Details
Target: scaffold0023 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: scaffold0023
Description:
Target: scaffold0023; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 79 - 228
Target Start/End: Original strand, 114350 - 114499
Alignment:
| Q |
79 |
gtcatgatgttattaaacctcaacctcaaactttttcacctgattctccttggtttaataggaaacattgtagttttgtgacacagtctgtaatggattc |
178 |
Q |
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| T |
114350 |
gtcatgatgttattaaacctcaacctcaaactttttcacctgattctccttggtttaataggaaacattgtagttttgtgacacagtctgtaatggattc |
114449 |
T |
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| Q |
179 |
aaataaagatggtaatattaccaaagatgttcacgactcagagcctatcc |
228 |
Q |
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| T |
114450 |
aaataaagatggtaatattaccaaagatgttcacgactcagagcctatcc |
114499 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 80 - 162
Target Start/End: Complemental strand, 33865821 - 33865739
Alignment:
| Q |
80 |
tcatgatgttattaaacctcaacctcaaactttttcacctgattctccttggtttaataggaaacattgtagttttgtgacac |
162 |
Q |
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| T |
33865821 |
tcatgaagttattaaacctcaacctcgaactttttcatctcattcaccatggttgaatgggaaatataataattttgtgacac |
33865739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 81 - 194
Target Start/End: Complemental strand, 33762702 - 33762589
Alignment:
| Q |
81 |
catgatgttattaaacctcaacctcaaactttttcacctgattctccttggtttaataggaaacattgtagttttgtgacacagtctgtaatggattcaa |
180 |
Q |
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| T |
33762702 |
catgaagttattaaacctcaacctcgaattttttcaactcattcaccatggttgaacaagaagcaaaataattttgttacacaaccagtactggcttcaa |
33762603 |
T |
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| Q |
181 |
ataaagatggtaat |
194 |
Q |
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| T |
33762602 |
ataaagatggtaat |
33762589 |
T |
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