View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6753_low_19 (Length: 228)

Name: NF6753_low_19
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6753_low_19
NF6753_low_19
[»] chr8 (8 HSPs)
chr8 (7-228)||(2258140-2258361)
chr8 (139-225)||(28207592-28207678)
chr8 (136-208)||(16723264-16723336)
chr8 (176-226)||(1135166-1135216)
chr8 (184-226)||(2250367-2250409)
chr8 (166-210)||(167911-167955)
chr8 (185-225)||(3146050-3146090)
chr8 (185-225)||(35901945-35901985)
[»] chr5 (6 HSPs)
chr5 (140-225)||(30501192-30501277)
chr5 (140-225)||(30541535-30541620)
chr5 (165-225)||(16667344-16667404)
chr5 (167-225)||(18229654-18229712)
chr5 (165-228)||(8208173-8208236)
chr5 (184-226)||(3140827-3140869)
[»] chr3 (5 HSPs)
chr3 (141-225)||(48180223-48180307)
chr3 (184-225)||(49362406-49362447)
chr3 (184-223)||(52249339-52249378)
chr3 (191-228)||(29083949-29083986)
chr3 (185-213)||(35177880-35177908)
[»] chr7 (6 HSPs)
chr7 (138-225)||(27123241-27123328)
chr7 (169-225)||(21727458-21727514)
chr7 (184-226)||(44592879-44592921)
chr7 (138-225)||(28770444-28770531)
chr7 (139-210)||(44537309-44537380)
chr7 (165-226)||(39321033-39321094)
[»] chr2 (1 HSPs)
chr2 (139-225)||(1334936-1335022)
[»] chr4 (11 HSPs)
chr4 (141-226)||(27953092-27953176)
chr4 (139-207)||(8297839-8297907)
chr4 (139-225)||(20394606-20394692)
chr4 (184-225)||(23605979-23606020)
chr4 (142-225)||(41462020-41462103)
chr4 (139-210)||(51834882-51834953)
chr4 (167-225)||(35777751-35777809)
chr4 (184-226)||(47995788-47995830)
chr4 (165-226)||(31174702-31174763)
chr4 (137-210)||(45900216-45900289)
chr4 (166-226)||(7852595-7852655)
[»] chr1 (4 HSPs)
chr1 (136-225)||(39150547-39150636)
chr1 (141-225)||(7212745-7212827)
chr1 (139-226)||(48022404-48022491)
chr1 (184-226)||(30822827-30822869)
[»] scaffold0036 (1 HSPs)
scaffold0036 (135-210)||(62592-62667)
[»] chr6 (4 HSPs)
chr6 (140-225)||(3766249-3766331)
chr6 (185-226)||(26669330-26669371)
chr6 (165-225)||(1840977-1841037)
chr6 (139-179)||(13445829-13445869)
[»] scaffold0119 (1 HSPs)
scaffold0119 (185-226)||(1422-1463)


Alignment Details
Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 228
Target Start/End: Complemental strand, 2258361 - 2258140
Alignment:
Q  7 aaattaataatgtggacatcaataaatgaaatagtgtaaatcagcatggcccctaaatcaacaaaatttcaaattcacacatgaactccaccacaattaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2258361 aaattaataatgtggacatcaataaatgaaatagtgtaaatcagcatggcccctaaatcaacaaaatttcaaattcacacatgaactccaccacaattaa 2258262  T
Q  107 attttcttttctcacatatttaataaagatatgggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| ||||| | |||||||||||||||||||||||    
T  2258261 attttcttttctcacatatttaataaagatatgggtcttgttaacgagttttcccgtggcactctttaagcatcccaaatttaataattattcttttaaa 2258162  T
Q  207 aagttaatcattacaattttta 228  Q
    ||||||||||||||||||||||    
T  2258161 aagttaatcattacaattttta 2258140  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 28207592 - 28207678
Alignment:
Q  139 gggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    |||||||||||||||||  |||||   ||||||||| ||||| | ||||||| ||| ||||||||||||||| ||  ||||||||||    
T  28207592 gggtcttgttaacgagtgcccccgagacactctttaagcatcccaaatttaacaataattcttttaaaaagtcaactattacaattt 28207678  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 136 - 208
Target Start/End: Complemental strand, 16723336 - 16723264
Alignment:
Q  136 tatgggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaa 208  Q
    ||||||||||||||||||||  ||||   |||||||||| ||||| | |||||  ||||||||||||||||||    
T  16723336 tatgggtcttgttaacgagtgaccccagggcactctttaagcatcccaaattttgtaattattcttttaaaaa 16723264  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 176 - 226
Target Start/End: Original strand, 1135166 - 1135216
Alignment:
Q  176 gcatctccaatttaataattattcttttaaaaagttaatcattacaatttt 226  Q
    ||||||| |||||| |||||||||||||||||||| ||  |||||||||||    
T  1135166 gcatctcgaatttagtaattattcttttaaaaagtcaactattacaatttt 1135216  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 2250367 - 2250409
Alignment:
Q  184 aatttaataattattcttttaaaaagttaatcattacaatttt 226  Q
    ||||||||||||||||||||||||||| || ||||| ||||||    
T  2250367 aatttaataattattcttttaaaaagtcaaccattataatttt 2250409  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 210
Target Start/End: Complemental strand, 167955 - 167911
Alignment:
Q  166 cactctttacgcatctccaatttaataattattcttttaaaaagt 210  Q
    ||||||||| | ||||| ||||||| |||||||||||||||||||    
T  167955 cactctttaagtatctcaaatttaaaaattattcttttaaaaagt 167911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 3146050 - 3146090
Alignment:
Q  185 atttaataattattcttttaaaaagttaatcattacaattt 225  Q
    ||||| |||||||||||||||||||||||  ||||||||||    
T  3146050 atttagtaattattcttttaaaaagttaactattacaattt 3146090  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 225
Target Start/End: Original strand, 35901945 - 35901985
Alignment:
Q  185 atttaataattattcttttaaaaagttaatcattacaattt 225  Q
    |||||||||||||| ||||||||||| ||| ||||||||||    
T  35901945 atttaataattatttttttaaaaagtcaattattacaattt 35901985  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 30501277 - 30501192
Alignment:
Q  140 ggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    ||||||||||||||||  ||||   |||||||||| ||||| | |||||| |||||||||||||||||||| ||| ||||||||||    
T  30501277 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaattt 30501192  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 140 - 225
Target Start/End: Complemental strand, 30541620 - 30541535
Alignment:
Q  140 ggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    ||||||||||||||||  ||||   |||||||||| ||||| | |||||| |||||||||||||||||||| ||| ||||||||||    
T  30541620 ggtcttgttaacgagtgcccccagggcactctttaagcatcccaaatttagtaattattcttttaaaaagtcaattattacaattt 30541535  T

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Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 165 - 225
Target Start/End: Complemental strand, 16667404 - 16667344
Alignment:
Q  165 gcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    |||||||||| ||||| | ||||||||||||||||||||||||||| ||| ||||||||||    
T  16667404 gcactctttaagcatcacaaatttaataattattcttttaaaaagtcaattattacaattt 16667344  T

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Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 18229712 - 18229654
Alignment:
Q  167 actctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    |||||||| ||||| | |||||| |||||||||||||||||||||||  ||||||||||    
T  18229712 actctttaagcatcccaaatttagtaattattcttttaaaaagttaactattacaattt 18229654  T

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Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 228
Target Start/End: Original strand, 8208173 - 8208236
Alignment:
Q  165 gcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattttta 228  Q
    |||||||||| |||| |  ||||| | ||||||||||||||||||| ||| |||||||||||||    
T  8208173 gcactctttaagcattttaaatttgaaaattattcttttaaaaagtcaattattacaattttta 8208236  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 3140827 - 3140869
Alignment:
Q  184 aatttaataattattcttttaaaaagttaatcattacaatttt 226  Q
    ||||||||||||||||||||||||||| ||  |||||||||||    
T  3140827 aatttaataattattcttttaaaaagtcaactattacaatttt 3140869  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 48180307 - 48180223
Alignment:
Q  141 gtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    ||||||||||||||| || |||   ||||||||| ||||| ||||||||| ||||||||||||||||||| ||  ||||||||||    
T  48180307 gtcttgttaacgagtgtctccgggacactctttaagcatccccaatttaacaattattcttttaaaaagtcaactattacaattt 48180223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 49362447 - 49362406
Alignment:
Q  184 aatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    ||||||||||||||||||||||||||||||  ||||||||||    
T  49362447 aatttaataattattcttttaaaaagttaactattacaattt 49362406  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 184 - 223
Target Start/End: Original strand, 52249339 - 52249378
Alignment:
Q  184 aatttaataattattcttttaaaaagttaatcattacaat 223  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  52249339 aatttaataattattcttttaaaaagttaactattacaat 52249378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 191 - 228
Target Start/End: Complemental strand, 29083986 - 29083949
Alignment:
Q  191 taattattcttttaaaaagttaatcattacaattttta 228  Q
    |||||||||||||||||||||||  |||||||||||||    
T  29083986 taattattcttttaaaaagttaactattacaattttta 29083949  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 213
Target Start/End: Complemental strand, 35177908 - 35177880
Alignment:
Q  185 atttaataattattcttttaaaaagttaa 213  Q
    |||||||||||||||||||||||||||||    
T  35177908 atttaataattattcttttaaaaagttaa 35177880  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 27123241 - 27123328
Alignment:
Q  138 tgggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    ||||||||||||||||||  |||||  |||||||||| ||||| | |||||| |||| ||||||||||||||| ||  ||||||||||    
T  27123241 tgggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaatcattcttttaaaaagtcaactattacaattt 27123328  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 21727514 - 21727458
Alignment:
Q  169 tctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    |||||| |||||||||||||| |||||||||||||||||||| ||  ||||||||||    
T  21727514 tctttaagcatctccaatttagtaattattcttttaaaaagtcaactattacaattt 21727458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 44592879 - 44592921
Alignment:
Q  184 aatttaataattattcttttaaaaagttaatcattacaatttt 226  Q
    ||||||||||||||||||||||||||||||  |||||||||||    
T  44592879 aatttaataattattcttttaaaaagttaactattacaatttt 44592921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 28770444 - 28770531
Alignment:
Q  138 tgggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    ||||||||||||||||||  | |||  |||||||||| ||||| | || ||| ||||||||||||| |||||| ||  ||||||||||    
T  28770444 tgggtcttgttaacgagtgcctccggggcactctttaagcatcccaaaattagtaattattcttttgaaaagtcaactattacaattt 28770531  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 44537309 - 44537380
Alignment:
Q  139 gggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagt 210  Q
    |||||| ||||||||||  ||| | ||||||||||| ||||| |  ||||| ||||||||||||||||||||    
T  44537309 gggtctcgttaacgagtgcccctgatgcactctttaagcatcccatatttagtaattattcttttaaaaagt 44537380  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 39321094 - 39321033
Alignment:
Q  165 gcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaatttt 226  Q
    |||||||||| ||||  | ||||||| ||||||||||||||||||| ||  |||||||||||    
T  39321094 gcactctttaagcataccaaatttaacaattattcttttaaaaagtcaactattacaatttt 39321033  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 139 - 225
Target Start/End: Complemental strand, 1335022 - 1334936
Alignment:
Q  139 gggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    ||||||||||||||||| || |||  |||||||||| ||||| | ||||||||||||||||||| ||||| | ||  ||||||||||    
T  1335022 gggtcttgttaacgagtatctccggggcactctttaagcatcccaaatttaataattattctttaaaaaaatcaactattacaattt 1334936  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 141 - 226
Target Start/End: Complemental strand, 27953176 - 27953092
Alignment:
Q  141 gtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaatttt 226  Q
    ||||||||||||||| || |||  |||||||||| ||||||| |||||| | |||||| ||||||||||||||  |||||||||||    
T  27953176 gtcttgttaacgagtgtctccggagcactctttaagcatctcaaatttagt-attattattttaaaaagttaactattacaatttt 27953092  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 139 - 207
Target Start/End: Original strand, 8297839 - 8297907
Alignment:
Q  139 gggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaa 207  Q
    |||||||||||||||||  |||||  |||||||||| ||||| | |||||| |||||||||||||||||    
T  8297839 gggtcttgttaacgagtgcccccggggcactctttaagcatcccaaatttagtaattattcttttaaaa 8297907  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 139 - 225
Target Start/End: Original strand, 20394606 - 20394692
Alignment:
Q  139 gggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    |||| |||||||||||| || ||   |||||||||| ||||| | |||||| |||||||||||||||||||| ||  ||||||||||    
T  20394606 gggttttgttaacgagtgtctccagagcactctttaagcatcccaaatttagtaattattcttttaaaaagtgaactattacaattt 20394692  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 184 - 225
Target Start/End: Complemental strand, 23606020 - 23605979
Alignment:
Q  184 aatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    |||||| |||||||||||||||||||||||| ||||||||||    
T  23606020 aatttagtaattattcttttaaaaagttaattattacaattt 23605979  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 41462020 - 41462103
Alignment:
Q  142 tcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    |||||||||||||| |||| |  |||||||||| |||| |   ||||| |||||||||||||||||||| ||  ||||||||||    
T  41462020 tcttgttaacgagtgtccctggagcactctttaagcattttatatttagtaattattcttttaaaaagtcaactattacaattt 41462103  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 210
Target Start/End: Original strand, 51834882 - 51834953
Alignment:
Q  139 gggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagt 210  Q
    |||||||||||| |||||||||||   ||||||||| |||||   ||||||  |||||||||||||||||||    
T  51834882 gggtcttgttaatgagtttccccgggacactctttaagcatcctaaatttagcaattattcttttaaaaagt 51834953  T

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Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 225
Target Start/End: Complemental strand, 35777809 - 35777751
Alignment:
Q  167 actctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    ||||||||  |||| | |||||| |||||||||||||||||||||||  ||||||||||    
T  35777809 actctttaaccatcccaaatttagtaattattcttttaaaaagttaactattacaattt 35777751  T

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Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 47995830 - 47995788
Alignment:
Q  184 aatttaataattattcttttaaaaagttaatcattacaatttt 226  Q
    |||||| |||||| ||||||||||||||||| |||||||||||    
T  47995830 aatttagtaattactcttttaaaaagttaattattacaatttt 47995788  T

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Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 165 - 226
Target Start/End: Complemental strand, 31174763 - 31174702
Alignment:
Q  165 gcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaatttt 226  Q
    |||||||||| ||||||  |||||  |||||||||||||||||||||||   ||||||||||    
T  31174763 gcactctttaagcatctaaaattttgtaattattcttttaaaaagttaactgttacaatttt 31174702  T

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Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 210
Target Start/End: Complemental strand, 45900289 - 45900216
Alignment:
Q  137 atgggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagt 210  Q
    |||||||||||||||||||  |||||  |||||||||| |||||   ||||||  ||||||||||||| |||||    
T  45900289 atgggtcttgttaacgagtgcccccgaggcactctttaagcatcctaaatttagcaattattcttttataaagt 45900216  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 7852655 - 7852595
Alignment:
Q  166 cactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaatttt 226  Q
    ||||||||| |||||   |||||| |||||||||||||||||| ||||  |||||||||||    
T  7852655 cactctttaagcatcctaaatttagtaattattcttttaaaaaattaactattacaatttt 7852595  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 39150547 - 39150636
Alignment:
Q  136 tatgggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    ||||||||||||||||||||  |||||  |||||||||| |||||   |||||| ||||||||||| |||||||| ||  ||||||||||    
T  39150547 tatgggtcttgttaacgagtgcccccggggcactctttaagcatcctaaatttagtaattattcttgtaaaaagtcaactattacaattt 39150636  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 7212745 - 7212827
Alignment:
Q  141 gtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    ||||||||||||||| ||||  |  ||||||||| | ||||| |||||| ||||||| |||||||||||||||  ||||||||||    
T  7212745 gtcttgttaacgagtgtcccgat--cactctttaagtatctcaaatttagtaattatacttttaaaaagttaacaattacaattt 7212827  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 226
Target Start/End: Complemental strand, 48022491 - 48022404
Alignment:
Q  139 gggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaatttt 226  Q
    |||||||||||||||||  ||| || | |||||||| ||||| |  ||||| |||||||| ||||||||||||||  ||| |||||||    
T  48022491 gggtcttgttaacgagtgcccctgtggtactctttaagcatcccatatttagtaattattgttttaaaaagttaactattgcaatttt 48022404  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Complemental strand, 30822869 - 30822827
Alignment:
Q  184 aatttaataattattcttttaaaaagttaatcattacaatttt 226  Q
    |||||| |||||||||| ||||||||||||| |||||||||||    
T  30822869 aatttagtaattattctcttaaaaagttaattattacaatttt 30822827  T

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Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 210
Target Start/End: Complemental strand, 62667 - 62592
Alignment:
Q  135 atatgggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagt 210  Q
    ||||||||||||||||||||| || ||   | |||||||| |||||||  ||||| ||||||||||||||||||||    
T  62667 atatgggtcttgttaacgagtgtctccagggtactctttaagcatctcatatttagtaattattcttttaaaaagt 62592  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 140 - 225
Target Start/End: Original strand, 3766249 - 3766331
Alignment:
Q  140 ggtcttgttaacgagtttccccgttgcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    ||||||||||||||||  |||||  |||||||||| ||||| | |||||   ||||||||||||||||||| ||| ||||||||||    
T  3766249 ggtcttgttaacgagtg-ccccg--gcactctttaagcatcccaaatttggaaattattcttttaaaaagtcaattattacaattt 3766331  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Complemental strand, 26669371 - 26669330
Alignment:
Q  185 atttaataattattcttttaaaaagttaatcattacaatttt 226  Q
    |||||||||||||||||||||||||| ||  |||||||||||    
T  26669371 atttaataattattcttttaaaaagtcaactattacaatttt 26669330  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 165 - 225
Target Start/End: Original strand, 1840977 - 1841037
Alignment:
Q  165 gcactctttacgcatctccaatttaataattattcttttaaaaagttaatcattacaattt 225  Q
    |||||||||| |||| |  ||||||||||||||||||||||||| | ||  ||||||||||    
T  1840977 gcactctttaagcatattaaatttaataattattcttttaaaaaatcaactattacaattt 1841037  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 179
Target Start/End: Complemental strand, 13445869 - 13445829
Alignment:
Q  139 gggtcttgttaacgagtttccccgttgcactctttacgcat 179  Q
    ||||||||||||||||| |||||| ||||||||||| ||||    
T  13445869 gggtcttgttaacgagtgtccccggtgcactctttaagcat 13445829  T

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Target: scaffold0119 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 226
Target Start/End: Original strand, 1422 - 1463
Alignment:
Q  185 atttaataattattcttttaaaaagttaatcattacaatttt 226  Q
    |||||||||||||||||||||||||| ||  |||||||||||    
T  1422 atttaataattattcttttaaaaagtcaactattacaatttt 1463  T

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