View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6753_low_3 (Length: 464)
Name: NF6753_low_3
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6753_low_3 |
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| [»] scaffold0014 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 233; Significance: 1e-128; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 9 - 241
Target Start/End: Complemental strand, 27242409 - 27242177
Alignment:
| Q |
9 |
atatcaaacgtatgattgttgatgtaatacgactctatgatgatgtttagggattagaaaactgtcaggccacgagccgaaaactgtcaaatttagggct |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27242409 |
atatcaaacgtatgattgttgatgtaatacgactctatgatgatgtttagggattagaaaactgtcaggccacgagccgaaaactgtcaaatttagggct |
27242310 |
T |
|
| Q |
109 |
gctagaactgcagtcaacgaaaacttcaaatatccagaactcgagaggggtgggtaaatagcagcaagtccagaaagaaaccacatagtaattcaatagt |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27242309 |
gctagaactgcagtcaacgaaaacttcaaatatccagaactcgagaggggtgggtaaatagcagcaagtccagaaagaaaccacatagtaattcaatagt |
27242210 |
T |
|
| Q |
209 |
ggtgaaaggtgagggtagacttcaatgagtgca |
241 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
27242209 |
ggtgaaaggtgagggtagacttcaatgagtgca |
27242177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 246 - 405
Target Start/End: Complemental strand, 27236376 - 27236217
Alignment:
| Q |
246 |
tccttgtgaattcatttcaaactcaattcctagaaagtatgtgagattgcctagatcagacatctcaaacttcttcatcatattcttcttaaaaaccttc |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||| ||||||||||||||||||| |
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| T |
27236376 |
tccttgtgaattcatttcaaactcaattcctagaaagtatgtgagattgcccacatctgacatctcaaacatcttcatcgtattcttcttaaaaacctta |
27236277 |
T |
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| Q |
346 |
atttcctcttcattttttccagcaactatcatatcatccacatataagcatacaataagc |
405 |
Q |
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|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27236276 |
atttcctcttcattgtttccaataactatcatatcatccacatataagcatacaataagc |
27236217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 247 - 314
Target Start/End: Complemental strand, 9038778 - 9038712
Alignment:
| Q |
247 |
ccttgtgaattcatttcaaactcaattcctagaaagtatgtgagattgcctagatcagacatctcaaa |
314 |
Q |
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|||||||||||||||||||||||||| || || |||||| |||| ||||||||||||||||||||||| |
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| T |
9038778 |
ccttgtgaattcatttcaaactcaatgcccaggaagtatatgag-ttgcctagatcagacatctcaaa |
9038712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 200 - 241
Target Start/End: Complemental strand, 27249812 - 27249771
Alignment:
| Q |
200 |
ttcaatagtggtgaaaggtgagggtagacttcaatgagtgca |
241 |
Q |
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||||||||||||||||||||||| |||||||||||||||||| |
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| T |
27249812 |
ttcaatagtggtgaaaggtgaggatagacttcaatgagtgca |
27249771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 120; Significance: 3e-61; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 246 - 405
Target Start/End: Complemental strand, 56562323 - 56562164
Alignment:
| Q |
246 |
tccttgtgaattcatttcaaactcaattcctagaaagtatgtgagattgcctagatcagacatctcaaacttcttcatcatattcttcttaaaaaccttc |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||||||||||||| |
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| T |
56562323 |
tccttgtgaattcatttcaaactcaattcctagaaagtatgtgagattgcccagatcagacatctcaaacctcttcatcatgtttttcttaaaaaccttc |
56562224 |
T |
|
| Q |
346 |
atttcctcttcattttttccagcaactatcatatcatccacatataagcatacaataagc |
405 |
Q |
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||||| |||||||| ||||||| ||| |||| ||||||||||||||||||||||||||| |
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| T |
56562223 |
atttcttcttcattgtttccagtaacaatcacgtcatccacatataagcatacaataagc |
56562164 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 246 - 405
Target Start/End: Original strand, 16836942 - 16837101
Alignment:
| Q |
246 |
tccttgtgaattcatttcaaactcaattcctagaaagtatgtgagattgcctagatcagacatctcaaacttcttcatcatattcttcttaaaaaccttc |
345 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||||||||||||| |
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| T |
16836942 |
tccttgtgaattcatttcaaactcaattcctagaaagtatgtgagattgcccagatcagacatctcaaacctcttcatcatgtttttcttaaaaaccttc |
16837041 |
T |
|
| Q |
346 |
atttcctcttcattttttccagcaactatcatatcatccacatataagcatacaataagc |
405 |
Q |
| |
|
||||| |||| ||| ||||||| || ||| | ||||||||||||||||||||||||||| |
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| T |
16837042 |
atttcttctttattgtttccagtaaaaatcctgtcatccacatataagcatacaataagc |
16837101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 245 - 405
Target Start/End: Complemental strand, 53009100 - 53008939
Alignment:
| Q |
245 |
atccttgtgaattcatttcaaactcaattcctagaaagtatgtgagattgcctagatcagacatctcaaacttcttcatcat-attcttcttaaaaacct |
343 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||| || || |||||||||| |
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| T |
53009100 |
atccttgtgaattcatttcaaactcaattcctagaaagtatgtgagatttcccagatcagacatctcaaacctcttcatcatgtttttttttaaaaacct |
53009001 |
T |
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| Q |
344 |
tcatttcctcttcattttttccagcaactatcatatcatccacatataagcatacaataagc |
405 |
Q |
| |
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| |||| |||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||| |
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| T |
53009000 |
acgtttcttcttcattgtttccagtaacaatcatgtcatccacatataagcatacaataagc |
53008939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 247 - 329
Target Start/End: Original strand, 11353247 - 11353329
Alignment:
| Q |
247 |
ccttgtgaattcatttcaaactcaattcctagaaagtatgtgagattgcctagatcagacatctcaaacttcttcatcatatt |
329 |
Q |
| |
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|||||||||||||||||||| |||||||| | ||||||||||| ||||||| |||||| || ||||||| ||| ||||||| |
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| T |
11353247 |
ccttgtgaattcatttcaaattcaattccaaagaagtatgtgagcttgcctaaatcagaaatttcaaactgattcttcatatt |
11353329 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 246 - 405
Target Start/End: Original strand, 45486822 - 45486981
Alignment:
| Q |
246 |
tccttgtgaattcatttcaaactcaattcctagaaagtatgtgagattgcctagatcagacatctcaaacttcttcatcatattcttcttaaaaaccttc |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| || ||||||||||||||| |
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| T |
45486822 |
tccttgtgaattcatttcaaactcaattcctagaaagtatgtaagattgcccagatcagacatctcaaacctcttcatcatgtttttcttaaaaaccttc |
45486921 |
T |
|
| Q |
346 |
atttcctcttcattttttccagcaactatcatatcatccacatataagcatacaataagc |
405 |
Q |
| |
|
||||| |||||||| ||||||| ||| ||||| ||||||||||||||||||||||||||| |
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| T |
45486922 |
atttcttcttcattgtttccagtaacaatcatgtcatccacatataagcatacaataagc |
45486981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 246 - 405
Target Start/End: Complemental strand, 5988511 - 5988352
Alignment:
| Q |
246 |
tccttgtgaattcatttcaaactcaattcctagaaagtatgtgagattgcctagatcagacatctcaaacttcttcatcatattcttcttaaaaaccttc |
345 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||||||||||||| |
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| T |
5988511 |
tccttgtgaattcatttcaaactcaattcctagaaagtatgtgagattgctcagatcagacatctcaaacctcttcatcatgtttttcttaaaaaccttc |
5988412 |
T |
|
| Q |
346 |
atttcctcttcattttttccagcaactatcatatcatccacatataagcatacaataagc |
405 |
Q |
| |
|
||||| |||||||| ||||||| ||| ||||| ||||| |||||||||||| |||||||| |
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|
| T |
5988411 |
atttcttcttcattgtttccagtaacaatcatgtcatctacatataagcattcaataagc |
5988352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0014 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold0014
Description:
Target: scaffold0014; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 246 - 400
Target Start/End: Complemental strand, 64306 - 64153
Alignment:
| Q |
246 |
tccttgtgaattcatttcaaactcaattcctagaaagtatgtgagattgcctagatcagacatctcaaacttcttcatcatattcttcttaaaaaccttc |
345 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| || ||||||||||||||| |||| |||| ||||||||| |||||||||||||||||||||||||||| |
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| T |
64306 |
tccttgtgaattcatt-caaactcaattcctataacgtatgtgagattgcccagataagacgtctcaaactccttcatcatattcttcttaaaaaccttc |
64208 |
T |
|
| Q |
346 |
atttcctcttcattttttccagcaactatcatatcatccacatataagcatacaa |
400 |
Q |
| |
|
||| | |||||||| |||||| ||||||||| |||||||||||||||||||||| |
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|
| T |
64207 |
attccatcttcattgtttccaataactatcatgtcatccacatataagcatacaa |
64153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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