View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6753_low_4 (Length: 430)

Name: NF6753_low_4
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6753_low_4
NF6753_low_4
[»] chr7 (15 HSPs)
chr7 (5-412)||(41860224-41860631)
chr7 (310-371)||(25251503-25251564)
chr7 (310-366)||(38911292-38911348)
chr7 (317-371)||(6384851-6384905)
chr7 (310-371)||(34000255-34000316)
chr7 (316-375)||(21164761-21164820)
chr7 (317-396)||(43998575-43998654)
chr7 (316-357)||(24071453-24071494)
chr7 (310-371)||(24839481-24839542)
chr7 (311-371)||(5526719-5526779)
chr7 (323-367)||(19684223-19684267)
chr7 (316-372)||(30463377-30463433)
chr7 (311-359)||(36731135-36731183)
chr7 (311-371)||(38553812-38553872)
chr7 (323-371)||(45425459-45425507)
[»] chr4 (26 HSPs)
chr4 (310-371)||(21266889-21266950)
chr4 (311-372)||(18635524-18635585)
chr4 (316-371)||(17134124-17134179)
chr4 (309-356)||(29910453-29910500)
chr4 (316-363)||(53530008-53530055)
chr4 (312-357)||(6460099-6460144)
chr4 (310-375)||(21465604-21465669)
chr4 (318-371)||(45029612-45029665)
chr4 (310-371)||(56497615-56497676)
chr4 (308-356)||(43183015-43183063)
chr4 (316-371)||(6520070-6520125)
chr4 (316-371)||(39842019-39842074)
chr4 (306-364)||(47016604-47016665)
chr4 (316-358)||(14136090-14136132)
chr4 (322-364)||(39794830-39794872)
chr4 (310-371)||(10336993-10337054)
chr4 (310-359)||(11314708-11314757)
chr4 (315-356)||(19124644-19124685)
chr4 (311-364)||(24488416-24488469)
chr4 (318-363)||(31542592-31542637)
chr4 (307-356)||(36203226-36203275)
chr4 (314-351)||(47930120-47930157)
chr4 (323-371)||(55962584-55962633)
chr4 (323-371)||(8974985-8975033)
chr4 (311-371)||(10006334-10006394)
chr4 (320-364)||(56096207-56096251)
[»] chr8 (10 HSPs)
chr8 (316-371)||(36948190-36948245)
chr8 (310-356)||(10967205-10967251)
chr8 (307-364)||(10732789-10732846)
chr8 (310-363)||(29293170-29293223)
chr8 (316-356)||(1877684-1877724)
chr8 (308-356)||(6100002-6100050)
chr8 (311-371)||(7679896-7679956)
chr8 (311-359)||(18148821-18148869)
chr8 (311-363)||(21557427-21557479)
chr8 (311-363)||(43073451-43073503)
[»] chr5 (22 HSPs)
chr5 (316-371)||(23118058-23118113)
chr5 (322-363)||(31305901-31305942)
chr5 (311-363)||(8882414-8882466)
chr5 (323-371)||(15105117-15105165)
chr5 (310-370)||(34206220-34206280)
chr5 (308-363)||(2249431-2249486)
chr5 (310-361)||(9123862-9123913)
chr5 (316-371)||(17672307-17672362)
chr5 (317-363)||(4763201-4763247)
chr5 (314-364)||(20211670-20211720)
chr5 (310-356)||(30893926-30893972)
chr5 (309-371)||(32559296-32559358)
chr5 (310-363)||(1512848-1512901)
chr5 (311-356)||(7630198-7630243)
chr5 (310-371)||(10199012-10199073)
chr5 (311-356)||(39914895-39914940)
chr5 (315-371)||(3955544-3955600)
chr5 (316-356)||(8545011-8545051)
chr5 (315-371)||(11647195-11647251)
chr5 (316-352)||(25979843-25979879)
chr5 (311-371)||(27679492-27679552)
chr5 (315-363)||(43396852-43396900)
[»] chr6 (20 HSPs)
chr6 (310-372)||(6470622-6470684)
chr6 (311-363)||(12336341-12336393)
chr6 (314-365)||(11713663-11713714)
chr6 (317-375)||(2617208-2617266)
chr6 (310-356)||(8381216-8381262)
chr6 (309-371)||(28592694-28592756)
chr6 (311-368)||(331896-331953)
chr6 (311-356)||(3808140-3808185)
chr6 (315-356)||(4450260-4450301)
chr6 (318-371)||(6503261-6503314)
chr6 (314-371)||(9333987-9334044)
chr6 (310-363)||(9987074-9987127)
chr6 (314-363)||(17177961-17178010)
chr6 (315-372)||(28046184-28046241)
chr6 (319-371)||(334142-334194)
chr6 (322-374)||(861848-861900)
chr6 (311-371)||(884076-884136)
chr6 (316-364)||(14552336-14552384)
chr6 (314-366)||(19581444-19581496)
chr6 (316-356)||(28758822-28758862)
[»] chr3 (20 HSPs)
chr3 (318-368)||(6000678-6000728)
chr3 (310-368)||(22462305-22462363)
chr3 (316-367)||(17278311-17278362)
chr3 (317-363)||(1501450-1501496)
chr3 (317-371)||(22843464-22843518)
chr3 (339-375)||(9027391-9027427)
chr3 (309-361)||(33633335-33633387)
chr3 (311-371)||(48376829-48376889)
chr3 (309-364)||(2563921-2563976)
chr3 (316-371)||(7651185-7651240)
chr3 (309-356)||(17588354-17588401)
chr3 (315-357)||(28595787-28595829)
chr3 (318-364)||(29800084-29800130)
chr3 (310-371)||(8127456-8127517)
chr3 (310-371)||(33745092-33745153)
chr3 (315-356)||(34962927-34962968)
chr3 (318-371)||(39100423-39100476)
chr3 (311-371)||(21914078-21914138)
chr3 (311-371)||(25505708-25505768)
chr3 (316-364)||(47377363-47377411)
[»] chr1 (16 HSPs)
chr1 (317-363)||(39492321-39492367)
chr1 (316-366)||(50939236-50939286)
chr1 (317-366)||(10841900-10841949)
chr1 (323-371)||(35527924-35527972)
chr1 (316-355)||(6842307-6842346)
chr1 (310-356)||(9639839-9639885)
chr1 (311-369)||(17396702-17396760)
chr1 (317-375)||(19316177-19316235)
chr1 (310-356)||(23397345-23397391)
chr1 (310-375)||(10292929-10292994)
chr1 (309-366)||(11241997-11242054)
chr1 (318-371)||(43284037-43284090)
chr1 (315-363)||(3136703-3136751)
chr1 (316-356)||(23221242-23221282)
chr1 (343-371)||(34599926-34599954)
chr1 (316-364)||(50849087-50849135)
[»] scaffold0178 (1 HSPs)
scaffold0178 (314-372)||(5387-5445)
[»] chr2 (19 HSPs)
chr2 (310-372)||(16204823-16204885)
chr2 (312-357)||(9459078-9459123)
chr2 (316-365)||(28825107-28825156)
chr2 (310-362)||(7640651-7640703)
chr2 (311-371)||(35727431-35727491)
chr2 (316-363)||(14483241-14483288)
chr2 (308-363)||(24548108-24548163)
chr2 (340-371)||(25603918-25603949)
chr2 (316-371)||(40967378-40967433)
chr2 (317-371)||(5028856-5028910)
chr2 (341-375)||(32957546-32957580)
chr2 (310-356)||(37320539-37320585)
chr2 (316-357)||(1238161-1238202)
chr2 (311-356)||(10058865-10058910)
chr2 (317-366)||(14944162-14944211)
chr2 (311-372)||(29979930-29979991)
chr2 (314-375)||(44926404-44926465)
chr2 (311-367)||(18231484-18231540)
chr2 (311-371)||(44026602-44026662)
[»] scaffold0354 (1 HSPs)
scaffold0354 (326-371)||(7227-7272)
[»] scaffold0533 (1 HSPs)
scaffold0533 (316-356)||(8873-8913)
[»] scaffold0262 (1 HSPs)
scaffold0262 (311-371)||(15937-15997)
[»] scaffold0238 (1 HSPs)
scaffold0238 (312-356)||(25384-25428)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 5 - 412
Target Start/End: Complemental strand, 41860631 - 41860224
Alignment:
Q  5 ccaataatatatctagcatcattcaacagtgaatagtctctaacagaaaatttggtgatcatataaggtgaattctacattctcaaactcaatttttctt 104  Q
    ||||||||||||||| ||||||| ||||||||||||||| |||||  ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  41860631 ccaataatatatctaacatcatttaacagtgaatagtctttaacacgaaatttgatgatcatataaggtgaattctacattctcaaactcaatttttctt 41860532  T
Q  105 atagagtagtcagagatcaaactcatcatcacttgtttcaattaaagcgaccaaattctttactatttgaaccaaccatatgttggtaagctattctatg 204  Q
    | | |||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  41860531 acacagtagtcagagatcaaactcatcaccacttgtttaaattaaggcgaccaaattctttactatttgaaccaaccatatgttggtaagctattctata 41860432  T
Q  205 atataatgacgnnnnnnnggtacggataatgacattttaaagcaggtatttatgtatgagataatttgttggataatattacctccatatcaaagtatag 304  Q
    |||||||||||       |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41860431 atataatgacgtttttttggtacaaataatgacattttaaagcaggtatttatgtatgagataatttgttggataatattacctccatatcaaagtatag 41860332  T
Q  305 gacactgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtttaaagctacgataataccaaaaaatataggaca 404  Q
    |||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| ||||||||||||| ||||  ||||| ||||||||||||||||    
T  41860331 gacactgtccccgtgagcttaacttaattgataaagacaatgcataatatatataagatttggggtttaaacctacactaatatcaaaaaatataggaca 41860232  T
Q  405 tttctaat 412  Q
    ||||||||    
T  41860231 tttctaat 41860224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 25251503 - 25251564
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||| |||||||||||||||| ||  || | |||||||||||||||||||||||||||||||    
T  25251503 tgtctccgtgagcttaactcagttggtataaacaatgcataatatatataaggtttggggtt 25251564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 310 - 366
Target Start/End: Original strand, 38911292 - 38911348
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttg 366  Q
    ||||||||||||||||||||| || |||||||||||| |||||||||  ||||||||    
T  38911292 tgtccccgtgagcttaactcagttgataaagacaatgtataatatatgcaaggtttg 38911348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 6384851 - 6384905
Alignment:
Q  317 gtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||||||||||| ||||||| |||||||||||||||||  ||||| |||||||    
T  6384851 gtgagcttaactcagttaataaggacaatgcataatatatgcaaggtctggggtt 6384905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 34000255 - 34000316
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||| |||||||||||||||| || |||| || |||||||||||||| ||||||| ||||||    
T  34000255 tgtctccgtgagcttaactcagttgataaggataatgcataatatatgtaaggttcggggtt 34000316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 375
Target Start/End: Complemental strand, 21164820 - 21164761
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtttaaa 375  Q
    ||||||||||||||| ||  ||  || |||||||||||||||||||||||| ||||||||    
T  21164820 cgtgagcttaactcagttggtatggataatgcataatatatataaggtttgaggtttaaa 21164761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 317 - 396
Target Start/End: Original strand, 43998575 - 43998654
Alignment:
Q  317 gtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtttaaagctacgataataccaaaaaat 396  Q
    |||||||||| ||| || |||| ||||||||||| |||||  |||||||||||||| || ||| || || ||||||||||    
T  43998575 gtgagcttaagtcagttgataaggacaatgcatagtatatgcaaggtttggggtttgaacctaggacaacaccaaaaaat 43998654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 24071453 - 24071494
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatata 357  Q
    |||||||||||||||||| ||||||| || ||||||||||||    
T  24071453 cgtgagcttaactcaattgataaagataacgcataatatata 24071494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 24839481 - 24839542
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||| ||||||||||||||| ||  || ||||||||||||| |||| |||||| |||||||    
T  24839481 tgtcctcgtgagcttaactcagttggtatagacaatgcataaaatatgtaaggtctggggtt 24839542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 5526719 - 5526779
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||| |||||||||| |||| ||  ||  |||||||||||||||||||||| |||||||||    
T  5526719 gtcctcgtgagcttagctcagttggtatggacaatgcataatatatataagatttggggtt 5526779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 367
Target Start/End: Complemental strand, 19684267 - 19684223
Alignment:
Q  323 ttaactcaattaataaagacaatgcataatatatataaggtttgg 367  Q
    |||||||| || ||| |||||||||||||||||| ||||||||||    
T  19684267 ttaactcagttgatatagacaatgcataatatatgtaaggtttgg 19684223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 372
Target Start/End: Complemental strand, 30463433 - 30463377
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggttt 372  Q
    |||||| |||||||| ||| || ||||||||||||||||||  |||||| |||||||    
T  30463433 cgtgaggttaactcagttagtatagacaatgcataatatatgcaaggttcggggttt 30463377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 359
Target Start/End: Original strand, 36731135 - 36731183
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatata 359  Q
    |||||| |||| ||||||| |||  ||||||||||||||||||||||||    
T  36731135 gtccccttgagtttaactcgattggtaaagacaatgcataatatatata 36731183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 38553812 - 38553872
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||||||| |||| |||| ||  |||  |||||||||||||||| ||||||||||||||    
T  38553812 gtccccgtgaacttagctcagttggtaagaacaatgcataatatatgtaaggtttggggtt 38553872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 45425459 - 45425507
Alignment:
Q  323 ttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||||| || ||||||||||||||||||||||  |||||| ||||||    
T  45425459 ttaactcagttgataaagacaatgcataatatatgcaaggttcggggtt 45425507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 21266950 - 21266889
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||||||||||||| |||||||  ||||||||||||||||||||| ||||||||||||||    
T  21266950 tgtccccgtgagcttagctcaattgttaaagacaatgcataatatatgtaaggtttggggtt 21266889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 18635524 - 18635585
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggttt 372  Q
    |||||||||||||||||||| || |||| |||||||||||||||||| ||||| ||||||||    
T  18635524 gtccccgtgagcttaactcagttgataaggacaatgcataatatatacaaggtctggggttt 18635585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 17134124 - 17134179
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||||||||||||  || ||||||||||||||||||||||||| |||||||    
T  17134124 cgtgagcttaactcaattggtagagacaatgcataatatatataaggtctggggtt 17134179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 29910453 - 29910500
Alignment:
Q  309 ctgtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||    
T  29910453 ctgtccccgtgagcttaactcaattgataaggacaatgcataatatat 29910500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 53530008 - 53530055
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    ||||||||||||||| |||||||| |||||||||||||||| ||||||    
T  53530008 cgtgagcttaactcagttaataaaaacaatgcataatatatgtaaggt 53530055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 6460144 - 6460099
Alignment:
Q  312 tccccgtgagcttaactcaattaataaagacaatgcataatatata 357  Q
    |||||||||| |||||||| |||||| |||||||||||||||||||    
T  6460144 tccccgtgagtttaactcagttaatagagacaatgcataatatata 6460099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 21465604 - 21465669
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtttaaa 375  Q
    ||||| |||||| |||||||| ||| ||| ||||||||||||||||| ||||||||| | ||||||    
T  21465604 tgtcctcgtgagtttaactcagttagtaaggacaatgcataatatatgtaaggtttgagttttaaa 21465669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 45029665 - 45029612
Alignment:
Q  318 tgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||||||| ||  ||| ||||||||||||||||| ||||||||||||||    
T  45029665 tgagcttaactcatttggtaaggacaatgcataatatatgtaaggtttggggtt 45029612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 56497676 - 56497615
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||||||||||||| |||||||  ||| |||||||||||||||||  ||||| |||||||    
T  56497676 tgtccccgtgagcttagctcaattggtaaggacaatgcataatatatgcaaggtctggggtt 56497615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 43183063 - 43183015
Alignment:
Q  308 actgtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||||||||||||| || |||| || ||||||||||||||||||||||    
T  43183063 actgtccccgtgagcatatctcagttgataaagacaatgcataatatat 43183015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 6520070 - 6520125
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||| ||||||||| ||| |||||||||||||||||||||  |||||||| ||||    
T  6520070 cgtgatcttaactcagttagtaaagacaatgcataatatatgcaaggtttgaggtt 6520125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 371
Target Start/End: Complemental strand, 39842074 - 39842019
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||| ||||||||| || |||| ||||||||||||||||| ||||||||| ||||    
T  39842074 cgtgatcttaactcagttgataaggacaatgcataatatatgtaaggtttgaggtt 39842019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 306 - 364
Target Start/End: Original strand, 47016604 - 47016665
Alignment:
Q  306 acactgtccccgtgagcttaactcaat---taataaagacaatgcataatatatataaggtt 364  Q
    ||||| |||||||||||||| ||||||   | |||||||||||||||||||||| |||||||    
T  47016604 acactatccccgtgagcttagctcaatagttgataaagacaatgcataatatatgtaaggtt 47016665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 316 - 358
Target Start/End: Original strand, 14136090 - 14136132
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatat 358  Q
    |||||||||| |||| || ||||||||||||||||||||||||    
T  14136090 cgtgagcttagctcagttgataaagacaatgcataatatatat 14136132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 322 - 364
Target Start/End: Original strand, 39794830 - 39794872
Alignment:
Q  322 cttaactcaattaataaagacaatgcataatatatataaggtt 364  Q
    |||| |||| ||| |||||||||||||||||||||||||||||    
T  39794830 cttatctcagttactaaagacaatgcataatatatataaggtt 39794872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 371
Target Start/End: Complemental strand, 10337054 - 10336993
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||| ||||||||||||| ||   |||||||||||||||| ||| ||||||| ||||||    
T  10337054 tgtccccatgagcttaactcagttggcaaagacaatgcataatgtatgtaaggttcggggtt 10336993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 359
Target Start/End: Complemental strand, 11314757 - 11314708
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatata 359  Q
    ||||| ||| ||||||||||| || |||||||||||| ||||||||||||    
T  11314757 tgtcctcgtaagcttaactcagttgataaagacaatgtataatatatata 11314708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 356
Target Start/End: Complemental strand, 19124685 - 19124644
Alignment:
Q  315 ccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    |||||||||||||||| || ||||||||||| ||||||||||    
T  19124685 ccgtgagcttaactcagttgataaagacaatacataatatat 19124644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 364
Target Start/End: Original strand, 24488416 - 24488469
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtt 364  Q
    |||||||||| ||||||||| ||  ||| |||||||||||||||||| ||||||    
T  24488416 gtccccgtgatcttaactcagttggtaatgacaatgcataatatatacaaggtt 24488469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 363
Target Start/End: Original strand, 31542592 - 31542637
Alignment:
Q  318 tgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    |||||||| || |||||||||||||||| |||||||||| ||||||    
T  31542592 tgagcttagcttaattaataaagacaatacataatatatgtaaggt 31542637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 356
Target Start/End: Original strand, 36203226 - 36203275
Alignment:
Q  307 cactgtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    |||||||| |||||||||| |||| || |||| |||||||||||||||||    
T  36203226 cactgtcctcgtgagcttagctcagttgataaggacaatgcataatatat 36203275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 351
Target Start/End: Original strand, 47930120 - 47930157
Alignment:
Q  314 cccgtgagcttaactcaattaataaagacaatgcataa 351  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  47930120 cccgtaagcttaactcaattgataaagacaatgcataa 47930157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 55962633 - 55962584
Alignment:
Q  323 ttaactcaattaataaagacaatgcataata-tatataaggtttggggtt 371  Q
    |||||||| || ||| ||||||||||||||| ||||||||||||||||||    
T  55962633 ttaactcagttgatatagacaatgcataataatatataaggtttggggtt 55962584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 8975033 - 8974985
Alignment:
Q  323 ttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||| ||||| || ||| ||||||||||||||||||||||| |||||    
T  8975033 ttaacttaattattatagataatgcataatatatataaggtttagggtt 8974985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 10006334 - 10006394
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||||||||||||  ||| ||  |||||||||||||||||||||  ||||| |||||||    
T  10006334 gtccccgtgagcttaggtcatttggtaaagacaatgcataatatatgcaaggtctggggtt 10006394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 320 - 364
Target Start/End: Original strand, 56096207 - 56096251
Alignment:
Q  320 agcttaactcaattaataaagacaatgcataatatatataaggtt 364  Q
    ||||||||||| || |||| ||||||||||||||||| |||||||    
T  56096207 agcttaactcagttgataaggacaatgcataatatatgtaaggtt 56096251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 36948190 - 36948245
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||||||||| |||||| |||||||||| |||||||||| |||||||||||    
T  36948190 cgtgagcttaactcatttaatatagacaatgcaaaatatatatagggtttggggtt 36948245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 10967205 - 10967251
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    |||||||||||| ||||||||||| ||||  ||||||||||||||||    
T  10967205 tgtccccgtgagtttaactcaattgataagaacaatgcataatatat 10967251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 364
Target Start/End: Complemental strand, 10732846 - 10732789
Alignment:
Q  307 cactgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtt 364  Q
    |||||||| ||||||||||||||||||  ||   ||||||||||||||||| ||||||    
T  10732846 cactgtcctcgtgagcttaactcaattggtatgaacaatgcataatatatacaaggtt 10732789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 29293170 - 29293223
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    ||||| ||||||||||||||| |||||| |||||||  ||||||||| ||||||    
T  29293170 tgtcctcgtgagcttaactcagttaatatagacaatatataatatatgtaaggt 29293223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 1877724 - 1877684
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||||||||||||| || ||| ||||||||||||||||||    
T  1877724 cgtgagcttaactcagttgatatagacaatgcataatatat 1877684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 308 - 356
Target Start/End: Complemental strand, 6100050 - 6100002
Alignment:
Q  308 actgtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||| |||||||  ||| ||||||| ||||||||||||||||||||||    
T  6100050 actgttcccgtgaatttagctcaatttataaagacaatgcataatatat 6100002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 7679896 - 7679956
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||||| ||||||||||| ||   ||||||||||||||||||||  |||||| ||||||    
T  7679896 gtccccgtaagcttaactcagttggcaaagacaatgcataatatatgcaaggttcggggtt 7679956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 359
Target Start/End: Complemental strand, 18148869 - 18148821
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatata 359  Q
    |||| ||||||||||||||| ||||||   |||||||||||||||||||    
T  18148869 gtcctcgtgagcttaactcagttaatatgaacaatgcataatatatata 18148821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 363
Target Start/End: Original strand, 21557427 - 21557479
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    |||| ||||||||||||||| ||| ||  ||||||||||||||||| ||||||    
T  21557427 gtcctcgtgagcttaactcagttagtatggacaatgcataatatatgtaaggt 21557479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 43073503 - 43073451
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    |||||||| ||||||||||| ||  |||| |||||||||||||||| ||||||    
T  43073503 gtccccgtaagcttaactcagttggtaaaaacaatgcataatatatgtaaggt 43073451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 371
Target Start/End: Complemental strand, 23118113 - 23118058
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||||||||| || |||| ||||||||||||||||| ||||||||||||||    
T  23118113 cgtgagcttaactcagttgataaggacaatgcataatatatgtaaggtttggggtt 23118058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 322 - 363
Target Start/End: Complemental strand, 31305942 - 31305901
Alignment:
Q  322 cttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    |||||||||||| |||||||||||||||||||||| ||||||    
T  31305942 cttaactcaattgataaagacaatgcataatatatgtaaggt 31305901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 8882466 - 8882414
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    |||||||||||||||||||| || |||| |||| |||||||||||| ||||||    
T  8882466 gtccccgtgagcttaactcagttgataatgacagtgcataatatatgtaaggt 8882414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 371
Target Start/End: Complemental strand, 15105165 - 15105117
Alignment:
Q  323 ttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||||| ||  |||| |||||||||||||||||||||||||||||||    
T  15105165 ttaactcagttggtaaaaacaatgcataatatatataaggtttggggtt 15105117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 370
Target Start/End: Original strand, 34206220 - 34206280
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggt 370  Q
    |||||||||||| |||||||| ||  |||||||||||||||||||||  |||||| |||||    
T  34206220 tgtccccgtgagtttaactcagttggtaaagacaatgcataatatatgcaaggttcggggt 34206280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 363
Target Start/End: Complemental strand, 2249486 - 2249431
Alignment:
Q  308 actgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    ||||||| ||||||||||||||| ||| ||| |||||| |||||||||| ||||||    
T  2249486 actgtcctcgtgagcttaactcagttagtaaggacaatacataatatatgtaaggt 2249431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 310 - 361
Target Start/End: Complemental strand, 9123913 - 9123862
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataag 361  Q
    |||||| |||||||||||||| ||  ||||||||||||||||||||| ||||    
T  9123913 tgtccctgtgagcttaactcagttggtaaagacaatgcataatatatgtaag 9123862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 371
Target Start/End: Complemental strand, 17672362 - 17672307
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||||||| |||| || |||| ||| ||||||||||||||||||||| ||||||    
T  17672362 cgtgagcttagctcagttgataaggacgatgcataatatatataaggttcggggtt 17672307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 363
Target Start/End: Complemental strand, 4763247 - 4763201
Alignment:
Q  317 gtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    ||||| |||||||||||  ||||||||||||||||||||| ||||||    
T  4763247 gtgagtttaactcaattggtaaagacaatgcataatatatgtaaggt 4763201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 364
Target Start/End: Original strand, 20211670 - 20211720
Alignment:
Q  314 cccgtgagcttaactcaattaataaagacaatgcataatatatataaggtt 364  Q
    |||||||| | |||||| || ||||| ||||||||||||||||||||||||    
T  20211670 cccgtgagttcaactcagttgataaaaacaatgcataatatatataaggtt 20211720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Original strand, 30893926 - 30893972
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||| ||||||||||||||| ||  |||||||||||||||||||||    
T  30893926 tgtcctcgtgagcttaactcagtttgtaaagacaatgcataatatat 30893972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 371
Target Start/End: Original strand, 32559296 - 32559358
Alignment:
Q  309 ctgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||| |||||||||| ||||||| |||  |||||||||||| |||| |||||| |||||||    
T  32559296 ctgtcctcgtgagcttagctcaattgatattgacaatgcataaaatatgtaaggtctggggtt 32559358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 1512848 - 1512901
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    ||||| ||||||||||||||| ||| ||  ||||||||||||||||| ||||||    
T  1512848 tgtcctcgtgagcttaactcagttagtagggacaatgcataatatatgtaaggt 1512901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 7630243 - 7630198
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||||||||||||||||||  |  |||||||||||||||||||||    
T  7630243 gtccccgtgagcttaactcagatgctaaagacaatgcataatatat 7630198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 10199012 - 10199073
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||| |||||||||| |||| ||  ||  |||||||||||||||||||||||| |||||||    
T  10199012 tgtcctcgtgagcttagctcagttggtatggacaatgcataatatatataaggtgtggggtt 10199073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 356
Target Start/End: Original strand, 39914895 - 39914940
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    |||| ||||||||||||||||||  ||| |||||||||||||||||    
T  39914895 gtccgcgtgagcttaactcaattggtaaggacaatgcataatatat 39914940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 3955544 - 3955600
Alignment:
Q  315 ccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||||||||  ||||||  ||||||||||||||||||||| ||| ||| ||||||    
T  3955544 ccgtgagcttagttcaattggtaaagacaatgcataatatatgtaatgttcggggtt 3955600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 8545051 - 8545011
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||||||||||||| || |||| |||||||||||||||||    
T  8545051 cgtgagcttaactcagttgataaggacaatgcataatatat 8545011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 371
Target Start/End: Original strand, 11647195 - 11647251
Alignment:
Q  315 ccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||| ||||||||| ||  ||| |||||||||||||||||  |||||||||||||    
T  11647195 ccgtgaacttaactcagttggtaaggacaatgcataatatatgcaaggtttggggtt 11647251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 352
Target Start/End: Original strand, 25979843 - 25979879
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataat 352  Q
    |||||||||||||||||| || |||||||||||||||    
T  25979843 cgtgagcttaactcaattgattaagacaatgcataat 25979879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 27679492 - 27679552
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||||||||| |||| ||  |||||| ||||||||||||||  |||||| ||||||    
T  27679492 gtccccgtgagcttagctcagttggtaaagataatgcataatatatgcaaggttcggggtt 27679552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 363
Target Start/End: Original strand, 43396852 - 43396900
Alignment:
Q  315 ccgtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    |||||||| || ||||||| | |||||||||||||||||||| ||||||    
T  43396852 ccgtgagcatagctcaattgacaaagacaatgcataatatatgtaaggt 43396900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 6470684 - 6470622
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggttt 372  Q
    |||| |||||||||||||||| || |||||||||||||||||||||| |||| || |||||||    
T  6470684 tgtctccgtgagcttaactcagttgataaagacaatgcataatatatgtaagtttcggggttt 6470622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 363
Target Start/End: Complemental strand, 12336393 - 12336341
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    |||| |||||| |||||||| ||||||  ||||||||||||||||||||||||    
T  12336393 gtcctcgtgagtttaactcagttaatatggacaatgcataatatatataaggt 12336341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 314 - 365
Target Start/End: Original strand, 11713663 - 11713714
Alignment:
Q  314 cccgtgagcttaactcaattaataaagacaatgcataatatatataaggttt 365  Q
    ||||||||||||| ||||||  ||| || |||||||||||||||||||||||    
T  11713663 cccgtgagcttaaatcaattggtaaggataatgcataatatatataaggttt 11713714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Complemental strand, 2617266 - 2617208
Alignment:
Q  317 gtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtttaaa 375  Q
    |||||||||||| | ||  || |||||||||||||||||| ||||||||| ||||||||    
T  2617266 gtgagcttaacttagttggtagagacaatgcataatatatgtaaggtttgaggtttaaa 2617208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 8381262 - 8381216
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||||||||||||||||||| ||  |||||||||||||||| ||||    
T  8381262 tgtccccgtgagcttaactcagttggtaaagacaatgcataacatat 8381216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 309 - 371
Target Start/End: Complemental strand, 28592756 - 28592694
Alignment:
Q  309 ctgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||| ||||||||||  ||||||   |||||||||||||||||||| |||||| |||||||    
T  28592756 ctgtcctcgtgagcttagttcaattggcaaagacaatgcataatatatgtaaggtctggggtt 28592694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 331953 - 331896
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggg 368  Q
    |||| ||||||||||||||| ||  || ||||||||||||||||||  ||||||||||    
T  331953 gtcctcgtgagcttaactcagttggtagagacaatgcataatatatgcaaggtttggg 331896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 356
Target Start/End: Complemental strand, 3808185 - 3808140
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    |||||||||| ||||||||| ||| ||| |||||||||||||||||    
T  3808185 gtccccgtgaacttaactcagttagtaaggacaatgcataatatat 3808140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 4450260 - 4450301
Alignment:
Q  315 ccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||||||||| |||| || ||||||||||||||||||||||    
T  4450260 ccgtgagcttagctcagttgataaagacaatgcataatatat 4450301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 6503261 - 6503314
Alignment:
Q  318 tgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||||||||||  ||| || |||| ||||||||| ||||||||||||||    
T  6503261 tgagcttaactcaattgttaaggataatgtataatatatgtaaggtttggggtt 6503314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 371
Target Start/End: Complemental strand, 9334044 - 9333987
Alignment:
Q  314 cccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||| || |||||||| || | || ||||||||||||||||| ||||||||||||||    
T  9334044 cccgtaagtttaactcagttgacaaggacaatgcataatatatgtaaggtttggggtt 9333987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 363
Target Start/End: Original strand, 9987074 - 9987127
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    ||||||||||||||||||||| ||  ||| ||||||||||| ||||| ||||||    
T  9987074 tgtccccgtgagcttaactcagttggtaaggacaatgcatattatatgtaaggt 9987127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 363
Target Start/End: Complemental strand, 17178010 - 17177961
Alignment:
Q  314 cccgtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    |||||||||||| |||||||| ||| || |||||||||||||| ||||||    
T  17178010 cccgtgagcttagctcaattagtaaggaaaatgcataatatatgtaaggt 17177961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 372
Target Start/End: Complemental strand, 28046241 - 28046184
Alignment:
Q  315 ccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggttt 372  Q
    |||||||||||  ||| || ||||||||||||||||||||||  |||||||| |||||    
T  28046241 ccgtgagcttagttcagttgataaagacaatgcataatatatgcaaggtttgaggttt 28046184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 334142 - 334194
Alignment:
Q  319 gagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||| |||| || ||||||||||||||||||||||  ||||| |||||||    
T  334142 gagcttagctcagttgataaagacaatgcataatatatgcaaggtctggggtt 334194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 322 - 374
Target Start/End: Original strand, 861848 - 861900
Alignment:
Q  322 cttaactcaattaataaagacaatgcataatatatataaggtttggggtttaa 374  Q
    |||| ||||| | ||| ||||||| |||||||||| |||||||||||||||||    
T  861848 cttagctcaactcatagagacaatacataatatatgtaaggtttggggtttaa 861900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 884136 - 884076
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||||||||| || |||| | || |||||||||| |||||| ||||||||| ||||    
T  884136 gtccccgtgagcttagcttaattgacaaggacaatgcatgatatatgtaaggtttgaggtt 884076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Original strand, 14552336 - 14552384
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtt 364  Q
    ||||||||||||||| || ||| ||| ||||||||||||||| ||||||    
T  14552336 cgtgagcttaactcagttgatagagataatgcataatatatacaaggtt 14552384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 314 - 366
Target Start/End: Original strand, 19581444 - 19581496
Alignment:
Q  314 cccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttg 366  Q
    |||||||||||| ||||||| |||||||| || ||||||||||  ||||||||    
T  19581444 cccgtgagcttagctcaattgataaagactatacataatatatgcaaggtttg 19581496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 28758862 - 28758822
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||||||||||||||||||||  ||||| |||||||||||    
T  28758862 cgtgagcttaactcaattaatagggacaaagcataatatat 28758822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 368
Target Start/End: Complemental strand, 6000728 - 6000678
Alignment:
Q  318 tgagcttaactcaattaataaagacaatgcataatatatataaggtttggg 368  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||||||||    
T  6000728 tgagcttagctcaattgatatagacaatgcataatatatataaggtttggg 6000678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 310 - 368
Target Start/End: Original strand, 22462305 - 22462363
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggg 368  Q
    ||||||||||||||||||||| || |||| ||||||||||||||||| ||| |||||||    
T  22462305 tgtccccgtgagcttaactcagttgataaggacaatgcataatatatgtaatgtttggg 22462363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 367
Target Start/End: Complemental strand, 17278362 - 17278311
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtttgg 367  Q
    ||||||||||||||||||| || ||||||||||||| ||||| |||||||||    
T  17278362 cgtgagcttaactcaattagtagagacaatgcataaaatatacaaggtttgg 17278311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 1501450 - 1501496
Alignment:
Q  317 gtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    |||| |||| |||| ||||||||||||||||||||||||||||||||    
T  1501450 gtgaacttagctcagttaataaagacaatgcataatatatataaggt 1501496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 22843464 - 22843518
Alignment:
Q  317 gtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||| |||| ||| ||||||||||||||||||||| ||||||| ||||||    
T  22843464 gtgagcttagctcagttagtaaagacaatgcataatatatgtaaggttcggggtt 22843518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 375
Target Start/End: Complemental strand, 9027427 - 9027391
Alignment:
Q  339 agacaatgcataatatatataaggtttggggtttaaa 375  Q
    |||||||||||||||||||||||||||| ||||||||    
T  9027427 agacaatgcataatatatataaggtttgaggtttaaa 9027391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 309 - 361
Target Start/End: Complemental strand, 33633387 - 33633335
Alignment:
Q  309 ctgtccccgtgagcttaactcaattaataaagacaatgcataatatatataag 361  Q
    |||||| ||||||||||||||| ||| || |||||||||||||||||| ||||    
T  33633387 ctgtcctcgtgagcttaactcagttagtatagacaatgcataatatatgtaag 33633335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 48376829 - 48376889
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||| |||||||||| |||| ||  |||||| |||||||||||||| ||||||||||||||    
T  48376829 gtcctcgtgagcttagctcagttggtaaagataatgcataatatatgtaaggtttggggtt 48376889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 364
Target Start/End: Original strand, 2563921 - 2563976
Alignment:
Q  309 ctgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtt 364  Q
    |||||||||||||||||||||| || ||||| | |||| ||||||||| |||||||    
T  2563921 ctgtccccgtgagcttaactcagttgataaaaataatgaataatatatgtaaggtt 2563976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 371
Target Start/End: Original strand, 7651185 - 7651240
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||||||||| || |||  ||||||||||| ||||||||||||| ||||||    
T  7651185 cgtgagcttaactcagttgatagggacaatgcatagtatatataaggttcggggtt 7651240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 309 - 356
Target Start/End: Original strand, 17588354 - 17588401
Alignment:
Q  309 ctgtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    |||||||||||||||||||||| ||  ||| |||||||||||||||||    
T  17588354 ctgtccccgtgagcttaactcagttggtaaggacaatgcataatatat 17588401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 315 - 357
Target Start/End: Original strand, 28595787 - 28595829
Alignment:
Q  315 ccgtgagcttaactcaattaataaagacaatgcataatatata 357  Q
    |||||| ||||||||||||  ||||||||||||||||||||||    
T  28595787 ccgtgaacttaactcaattggtaaagacaatgcataatatata 28595829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 318 - 364
Target Start/End: Complemental strand, 29800130 - 29800084
Alignment:
Q  318 tgagcttaactcaattaataaagacaatgcataatatatataaggtt 364  Q
    |||||||||||||||| ||| |||||||| ||||||| |||||||||    
T  29800130 tgagcttaactcaattgatagagacaatgtataatatttataaggtt 29800084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 8127456 - 8127517
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||| ||||||||||||||| ||  ||| |||||||||||| ||||  |||||||||||||    
T  8127456 tgtcctcgtgagcttaactcagttggtaaggacaatgcataaaatatgcaaggtttggggtt 8127517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 371
Target Start/End: Original strand, 33745092 - 33745153
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||||||||||||| ||||||| |||  |||||||||||| ||||  ||||| |||||||    
T  33745092 tgtccccgtgagcttagctcaattgatatggacaatgcataaaatatgcaaggtctggggtt 33745153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 34962927 - 34962968
Alignment:
Q  315 ccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||||||||||||||||| |||| ||||||||||| |||||    
T  34962927 ccgtgagcttaactcaattgataaggacaatgcatactatat 34962968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 39100476 - 39100423
Alignment:
Q  318 tgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||||||| || ||||  ||||||||||||||||| |||||||| ||||    
T  39100476 tgagcttaactcagttgataagaacaatgcataatatatacaaggtttgaggtt 39100423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 21914138 - 21914078
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||| ||||||||||||| ||  ||| |||||||||||||||||  ||||| |||||||    
T  21914138 gtccccatgagcttaactcagttggtaaggacaatgcataatatatgcaaggtatggggtt 21914078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 25505768 - 25505708
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||| ||||||||||||| ||  ||| |||||||||||||||||  ||||| |||||||    
T  25505768 gtccccatgagcttaactcagtttgtaaggacaatgcataatatatgcaaggtctggggtt 25505708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 47377411 - 47377363
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtt 364  Q
    ||||||||||||||| ||  ||| |||||||||||||||||| ||||||    
T  47377411 cgtgagcttaactcagttggtaaggacaatgcataatatatacaaggtt 47377363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 363
Target Start/End: Original strand, 39492321 - 39492367
Alignment:
Q  317 gtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||    
T  39492321 gtgagtttaactcaattaataaagacaatgcataatatatgtaaggt 39492367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 316 - 366
Target Start/End: Original strand, 50939236 - 50939286
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtttg 366  Q
    ||||||||| | |||||||||||  ||||||||||||||||||||||||||    
T  50939236 cgtgagcttgattcaattaataagaacaatgcataatatatataaggtttg 50939286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 10841900 - 10841949
Alignment:
Q  317 gtgagcttaactcaattaataaagacaatgcataatatatataaggtttg 366  Q
    |||||||||||||| || |||  |||||||||||||||||||||||||||    
T  10841900 gtgagcttaactcagttgatatggacaatgcataatatatataaggtttg 10841949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 323 - 371
Target Start/End: Original strand, 35527924 - 35527972
Alignment:
Q  323 ttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||||| || ||||| | |||||||||||||||||||||||||||||    
T  35527924 ttaactcagttgataaaaataatgcataatatatataaggtttggggtt 35527972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 355
Target Start/End: Complemental strand, 6842346 - 6842307
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatata 355  Q
    ||||||||||||||||||| || |||||||||||||||||    
T  6842346 cgtgagcttaactcaattagtagagacaatgcataatata 6842307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 9639885 - 9639839
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||||||||||||||||||| ||  ||| |||||||||||||||||    
T  9639885 tgtccccgtgagcttaactcacttggtaaggacaatgcataatatat 9639839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 17396702 - 17396760
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttgggg 369  Q
    ||||||||||||||| |||| || | || |||||||||||||||||  |||||||||||    
T  17396702 gtccccgtgagcttagctcagttgacaaggacaatgcataatatattcaaggtttgggg 17396760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 375
Target Start/End: Original strand, 19316177 - 19316235
Alignment:
Q  317 gtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtttaaa 375  Q
    ||||| |||||||||||| ||   |||||||||||||||||||||||| | ||||||||    
T  19316177 gtgagtttaactcaattagtatgaacaatgcataatatatataaggttcgaggtttaaa 19316235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 23397391 - 23397345
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||||||||||||||||||| ||| ||| |||||||||||| ||||    
T  23397391 tgtccccgtgagcttaactcagttagtaatgacaatgcataacatat 23397345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 310 - 375
Target Start/End: Original strand, 10292929 - 10292994
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtttaaa 375  Q
    |||| |||||||||||||||| || |||  ||||||||||||||||| |||||   ||||||||||    
T  10292929 tgtctccgtgagcttaactcagttgatagggacaatgcataatatatgtaagggacggggtttaaa 10292994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 309 - 366
Target Start/End: Complemental strand, 11242054 - 11241997
Alignment:
Q  309 ctgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttg 366  Q
    |||| |||||||| |||||||| || | | |||||||||||||||||| |||||||||    
T  11242054 ctgtacccgtgagtttaactcagttgacagagacaatgcataatatatgtaaggtttg 11241997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 318 - 371
Target Start/End: Complemental strand, 43284090 - 43284037
Alignment:
Q  318 tgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||||||| ||| || |||||||| ||||||||| ||||||||| ||||    
T  43284090 tgagcttaactcagttagtagagacaatgtataatatatgtaaggtttgtggtt 43284037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 363
Target Start/End: Complemental strand, 3136751 - 3136703
Alignment:
Q  315 ccgtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    ||||||||| | |||||||  ||||||||||||||||||||| ||||||    
T  3136751 ccgtgagctgagctcaattggtaaagacaatgcataatatatgtaaggt 3136703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 23221282 - 23221242
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||| |||||||||||| ||||||| ||||||||||||||    
T  23221282 cgtgatcttaactcaattgataaagaaaatgcataatatat 23221242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 343 - 371
Target Start/End: Complemental strand, 34599954 - 34599926
Alignment:
Q  343 aatgcataatatatataaggtttggggtt 371  Q
    |||||||||||||||||||||||||||||    
T  34599954 aatgcataatatatataaggtttggggtt 34599926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 364
Target Start/End: Complemental strand, 50849135 - 50849087
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtt 364  Q
    ||||||||||||||| ||  ||| ||||||||||||||||| |||||||    
T  50849135 cgtgagcttaactcagttggtaatgacaatgcataatatatgtaaggtt 50849087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 314 - 372
Target Start/End: Complemental strand, 5445 - 5387
Alignment:
Q  314 cccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggttt 372  Q
    |||||||||||||||| |||  ||||||||| | |||||||||||||||| ||||||||    
T  5445 cccgtgagcttaactctatttttaaagacaacgtataatatatataaggtctggggttt 5387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 310 - 372
Target Start/End: Complemental strand, 16204885 - 16204823
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggttt 372  Q
    |||||| |||||||||||||| || |||| |||||||||||||||||  ||||| ||||||||    
T  16204885 tgtccctgtgagcttaactcagttgataaggacaatgcataatatatgcaaggtctggggttt 16204823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 312 - 357
Target Start/End: Complemental strand, 9459123 - 9459078
Alignment:
Q  312 tccccgtgagcttaactcaattaataaagacaatgcataatatata 357  Q
    |||||||||||||| |||| || |||||||||||||||||||||||    
T  9459123 tccccgtgagcttagctcagttgataaagacaatgcataatatata 9459078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 365
Target Start/End: Complemental strand, 28825156 - 28825107
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggttt 365  Q
    |||||||||||||||||| ||| | ||||||| |||||||||||||||||    
T  28825156 cgtgagcttaactcaattgatagaaacaatgcttaatatatataaggttt 28825107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 362
Target Start/End: Original strand, 7640651 - 7640703
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatatataagg 362  Q
    ||||||||||||||||||||||||  ||| |||||| |||||||||| |||||    
T  7640651 tgtccccgtgagcttaactcaattggtaaggacaatacataatatatgtaagg 7640703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 35727431 - 35727491
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||||||||||||||||||| ||  |||  ||||||||||||||||  |||||||||||||    
T  35727431 gtccccgtgagcttaactcagttggtaagaacaatgcataatatatgcaaggtttggggtt 35727491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 363
Target Start/End: Complemental strand, 14483288 - 14483241
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    ||||| ||||||||||||| || |||||||| ||||||||||||||||    
T  14483288 cgtgaacttaactcaattactagagacaatgtataatatatataaggt 14483241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 308 - 363
Target Start/End: Original strand, 24548108 - 24548163
Alignment:
Q  308 actgtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggt 363  Q
    ||||||| |||||| |||||||||||  || |||||||||||||||||| ||||||    
T  24548108 actgtcctcgtgagtttaactcaattggtatagacaatgcataatatatgtaaggt 24548163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 371
Target Start/End: Complemental strand, 25603949 - 25603918
Alignment:
Q  340 gacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||||||||||||||||||||||||||    
T  25603949 gacaatgcataatatatataaggtttggggtt 25603918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 316 - 371
Target Start/End: Complemental strand, 40967433 - 40967378
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||||||||| || |||| |||||||||||||||||  |||||||| ||||    
T  40967433 cgtgagcttaactcagttgataaggacaatgcataatatatgcaaggtttgaggtt 40967378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 317 - 371
Target Start/End: Original strand, 5028856 - 5028910
Alignment:
Q  317 gtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||| |||| || || | ||||||||||||||||| ||||||||||||||    
T  5028856 gtgagcttagctcagttgattaggacaatgcataatatatgtaaggtttggggtt 5028910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 341 - 375
Target Start/End: Complemental strand, 32957580 - 32957546
Alignment:
Q  341 acaatgcataatatatataaggtttggggtttaaa 375  Q
    |||||||||||||||| ||||||||||||||||||    
T  32957580 acaatgcataatatatgtaaggtttggggtttaaa 32957546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 356
Target Start/End: Complemental strand, 37320585 - 37320539
Alignment:
Q  310 tgtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||| ||||||||||||||| ||  |||||||||||||||||||||    
T  37320585 tgtccacgtgagcttaactcagttggtaaagacaatgcataatatat 37320539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 316 - 357
Target Start/End: Original strand, 1238161 - 1238202
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatata 357  Q
    |||||||||||||||||| |||  ||||||||||||||||||    
T  1238161 cgtgagcttaactcaattgatagggacaatgcataatatata 1238202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 356
Target Start/End: Original strand, 10058865 - 10058910
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||| |||||||||||||||||  || ||||||||||||||||||    
T  10058865 gtccctgtgagcttaactcaattggtagagacaatgcataatatat 10058910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 317 - 366
Target Start/End: Original strand, 14944162 - 14944211
Alignment:
Q  317 gtgagcttaactcaattaataaagacaatgcataatatatataaggtttg 366  Q
    |||||||||||||| ||| ||| ||||||||||||||||| |||| ||||    
T  14944162 gtgagcttaactcacttagtaaggacaatgcataatatatgtaagatttg 14944211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 29979991 - 29979930
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggttt 372  Q
    |||| |||| |||||||||| |||||||  ||||||||||||||||  ||||| ||||||||    
T  29979991 gtcctcgtgggcttaactcagttaataagaacaatgcataatatatgcaaggtatggggttt 29979930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 375
Target Start/End: Complemental strand, 44926465 - 44926404
Alignment:
Q  314 cccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtttaaa 375  Q
    |||||||||||| |||| ||  |||||||||||||| |||||| |||||| |||| ||||||    
T  44926465 cccgtgagcttatctcagttggtaaagacaatgcattatatatgtaaggtctgggatttaaa 44926404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 367
Target Start/End: Complemental strand, 18231540 - 18231484
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttgg 367  Q
    ||||||||||||||| |||| ||  ||| |||||||||||||||||  |||||||||    
T  18231540 gtccccgtgagcttagctcagttggtaaggacaatgcataatatatgcaaggtttgg 18231484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 371
Target Start/End: Original strand, 44026602 - 44026662
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||| ||||||||||||||||||  ||  ||||| ||||||||||| ||||||| ||||||    
T  44026602 gtcctcgtgagcttaactcaattggtatggacaacgcataatatatgtaaggttcggggtt 44026662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 371
Target Start/End: Complemental strand, 7272 - 7227
Alignment:
Q  326 actcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    ||||||||||||| ||||| ||||| |||||||||||| |||||||    
T  7272 actcaattaataaggacaacgcatattatatataaggtctggggtt 7227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 356
Target Start/End: Complemental strand, 8913 - 8873
Alignment:
Q  316 cgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||||||||||||||||  ||| |||||||||||||||||    
T  8913 cgtgagcttaactcaattggtaaggacaatgcataatatat 8873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 15997 - 15937
Alignment:
Q  311 gtccccgtgagcttaactcaattaataaagacaatgcataatatatataaggtttggggtt 371  Q
    |||| ||||||||||||||||||  ||| ||||||| |||||||||  ||||| |||||||    
T  15997 gtcctcgtgagcttaactcaattggtaaggacaatgtataatatatgcaaggtctggggtt 15937  T

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Target: scaffold0238 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 25384 - 25428
Alignment:
Q  312 tccccgtgagcttaactcaattaataaagacaatgcataatatat 356  Q
    ||||||||||||||||||| ||  ||| |||||||||||||||||    
T  25384 tccccgtgagcttaactcagttggtaaggacaatgcataatatat 25428  T

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