View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6753_low_5 (Length: 413)
Name: NF6753_low_5
Description: NF6753
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6753_low_5 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 389; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 2 - 394
Target Start/End: Complemental strand, 52032451 - 52032059
Alignment:
| Q |
2 |
aatggttcggaatctctcctgaccagctgtatcccaaatttgcaacttaatgcgtttgccatcaagttcaatggttcttatcttgaaatcaatgctgcca |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52032451 |
aatggttcggaatctctcctgaccagctgtatcccaaatttgcaacttaatgcgtttgccatcaagttcaatggttcttatcttgaaatcaatgctgcca |
52032352 |
T |
|
| Q |
102 |
tacatttttataataagattttattttcagaaaaaatatagatatatgtctgcttgagtacaattacttatgtgtataagatgaaggaaattcggtacca |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
52032351 |
tacatttttataataagattttattttcagaaaaaatatagatatatgtctgcttgagtacaattacttatgtgtataagataaaggaaattcggtacca |
52032252 |
T |
|
| Q |
202 |
acgttgacaaagtatttatatttaaaaatgagatttaataagtattatatatcaaacgaactctataggcccaagttagctgtatttctaaagcatattg |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52032251 |
acgttgacaaagtatttatatttaaaaatgagatttaataagtattatatatcaaacgaactctataggcccaagttagctgtatttctaaagcatattg |
52032152 |
T |
|
| Q |
302 |
aaagagaaagaaactcttatagcattattacaagggataaaagaagtgtccagatactaacccaatggtggtgataaaactggttgtgaagga |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52032151 |
aaagagaaagaaactcttatagcattattacaagggataaaagaagtgtccagatactaacccaatggtggtgataaaactggttgtgaagga |
52032059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 29341712 - 29341807
Alignment:
| Q |
2 |
aatggttcggaatctctcctgaccagctgtatcccaaatttgcaacttaatgcgtttgccatcaagttcaatggttcttatcttgaaatcaatgct |
97 |
Q |
| |
|
||||||||| || | ||| |||||||| || ||||| |||||||| || || || || |||||||| || ||||| ||||| |||||||||||||| |
|
|
| T |
29341712 |
aatggttcgaaaacgctcttgaccagccgtgtcccatatttgcaatttgattcgcttaccatcaagctctatggtccttattttgaaatcaatgct |
29341807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 2 - 97
Target Start/End: Original strand, 29349486 - 29349581
Alignment:
| Q |
2 |
aatggttcggaatctctcctgaccagctgtatcccaaatttgcaacttaatgcgtttgccatcaagttcaatggttcttatcttgaaatcaatgct |
97 |
Q |
| |
|
||||||||| || | ||| |||||||| || ||||| |||||||| || || || || |||||||| || ||||| ||||| |||||||||||||| |
|
|
| T |
29349486 |
aatggttcgaaaccgctcttgaccagccgtgtcccatatttgcaatttgattcgcttaccatcaagctctatggtccttattttgaaatcaatgct |
29349581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 23385426 - 23385495
Alignment:
| Q |
30 |
gtatcccaaatttgcaacttaatgcgtttgccatcaagttcaatggttcttatcttgaaatcaatgctgc |
99 |
Q |
| |
|
|||||||||||||| | ||| || |||||||||||||||||||||||||||||||| |||||||| |||| |
|
|
| T |
23385426 |
gtatcccaaatttggagcttgatccgtttgccatcaagttcaatggttcttatcttaaaatcaatactgc |
23385495 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 46
Target Start/End: Original strand, 26274218 - 26274254
Alignment:
| Q |
10 |
ggaatctctcctgaccagctgtatcccaaatttgcaa |
46 |
Q |
| |
|
||||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
26274218 |
ggaatctctcctggccagctgtatcccaaatctgcaa |
26274254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University