View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6754_high_12 (Length: 268)
Name: NF6754_high_12
Description: NF6754
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6754_high_12 |
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Alignment Details
Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 5 - 251
Target Start/End: Complemental strand, 3219873 - 3219629
Alignment:
| Q |
5 |
cagaaagagccattggaaagccgcaagtggggggaaatgatgatattgcaaaaagtttagaattttttacatgagctttactgcagcgctatctgaccac |
104 |
Q |
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| T |
3219873 |
cagaaagagccattggaaagccgcaagtggggggaaatgatgatattgcaaaaagtttagaatttt--acatgagctttactgcagcgctatctgaccac |
3219776 |
T |
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| Q |
105 |
tatcagtagtgctactctaaacttcaatgcaaaatggggtttcgtcgtgtcgcacccatgagcctatgttgactacacggatcaatgtgttcaattagat |
204 |
Q |
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| T |
3219775 |
tatcagtagtgctactctaaacttcaatgcaaaatggggtttcgtcgtgtcgcacccatgagccaatgttgactacacggatcaatgtgttcaattagat |
3219676 |
T |
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| Q |
205 |
cccttgattattgggataaaatcaaatcgcacatcagatccaaaata |
251 |
Q |
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| T |
3219675 |
cccttgattattgggataaaatcaaatcgcacatcagatccaaaata |
3219629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 109 - 199
Target Start/End: Original strand, 15985932 - 15986019
Alignment:
| Q |
109 |
agtagtgctactctaaacttcaatgcaaaatggggtttcgtcgtgtcgcacccatgagcctatgttgactacacggatcaatgtgttcaat |
199 |
Q |
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| T |
15985932 |
agtagcgctactctaaacttcaatgcaaaatggggtt---ttgtgtagcaccatggggcctatgttgactacatggatcaatgtgttcaat |
15986019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 166 - 251
Target Start/End: Complemental strand, 23727996 - 23727913
Alignment:
| Q |
166 |
gcctatgttgactacacggatcaatgtgttcaattagatcccttgattattgggataaaatcaaatcgcacatcagatccaaaata |
251 |
Q |
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| T |
23727996 |
gcctatattgactacatgaatcaat-tgttctatcaaatcccttggttatagggataaaatc-aatctcaaatcagatccaaaata |
23727913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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